Hydra image processor: 5-D GPU image analysis library with MATLAB and python wrappers

ClearVolume: open-source live 3D visualization for light-sheet microscopy

(2015) Loic A Royer et al.   NATURE METHODS

Efficient processing and analysis of large-scale light-sheet microscopy data

(2015) Fernando Amat et al.   Nature Protocols

Computational Image Analysis Reveals Intrinsic Multigenerational Differences between Anterior and Posterior Cerebral Cortex Neural Progenitor Cells

(2015) Mark R. Winter et al.   Stem Cell Reports

Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences

(2014) Eric Wait et al.   BMC BIOINFORMATICS

Medical image processing on the GPU – Past, present and future

(2013) Anders Eklund et al.   MEDICAL IMAGE ANALYSIS

Metadata matters: access to image data in the real world

(2010) Melissa Linkert et al.   JOURNAL OF CELL BIOLOGY