Differential gene regulatory pathways and co-expression networks associated with fire blight infection in apple (Malus × domestica)

Identification of Novel Strain-Specific and Environment-Dependent Minor QTLs Linked to Fire Blight Resistance in Apples

(2018) Elsa Desnoues et al.   PLANT MOLECULAR BIOLOGY REPORTER

Transcriptomic responses to biotic stresses in Malus x domestica: a meta-analysis study

(2018) Bipin Balan et al.   Scientific Reports

NPR1 as a transgenic crop protection strategy in horticultural species

(2018) Katchen Julliany P. Silva et al.   Horticulture Research

Fire blight resistance of Malus ×arnoldiana is controlled by a quantitative trait locus located at the distal end of linkage group 12

(2017) Ofere Francis Emeriewen et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Epistatic fire blight resistance QTL alleles in the apple cultivar ‘Enterprise’ and selection X-6398 discovered and characterized through pedigree-informed analysis

(2017) Eric van de Weg et al.   MOLECULAR BREEDING

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

(2017) Nicolas Daccord et al.   NATURE GENETICS

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

(2016) Kathleen Martin et al.   BMC GENOMICS

GmCYP82A3, a Soybean Cytochrome P450 Family Gene Involved in the Jasmonic Acid and Ethylene Signaling Pathway, Enhances Plant Resistance to Biotic and Abiotic Stresses

(2016) Qiang Yan et al.   PLoS One

Apple NPR1 homologs and their alternative splicing forms may contribute to SA and disease responses

(2016) Junke Zhang et al.   Tree Genetics & Genomes

Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection

(2016) Tim Kamber et al.   Scientific Reports

Uncovering co-expression gene network modules regulating fruit acidity in diverse apples

(2015) Yang Bai et al.   BMC GENOMICS

The Bacterial Alarmone (p)ppGpp Activates the Type III Secretion System in Erwinia amylovora

(2015) Veronica Ancona et al.   JOURNAL OF BACTERIOLOGY

Hormone activities and the cell cycle machinery in immunity-triggered growth inhibition

(2015) M. U. Reitz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Targeting of host organelles by pathogenic bacteria: a sophisticated subversion strategy

(2015) Pedro Escoll et al.   NATURE REVIEWS MICROBIOLOGY

Reference gene validation for qRT-PCR based gene expression studies in different developmental stages and under biotic stress in apple

(2015) Gulshan Kumar et al.   SCIENTIA HORTICULTURAE

Fire Blight Control: The Struggle Goes On. A Comparison of Different Fire Blight Control Methods in Switzerland with Respect to Biosafety, Efficacy and Durability

(2015) Michele Gusberti et al.   International Journal of Environmental Research and Public Health

Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis

(2015) Katherine C. H. Amrine et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Identification of a major quantitative trait locus for resistance to fire blight in the wild apple species Malus fusca

(2014) Ofere Emeriewen et al.   MOLECULAR BREEDING

QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora

(2014) Th. W. Wöhner et al.   MOLECULAR BREEDING

Engineering fire blight resistance into the apple cultivar ‘Gala’ using theFB_MR5CC-NBS-LRR resistance gene ofMalus × robusta5

(2014) Giovanni A. L. Broggini et al.   PLANT BIOTECHNOLOGY JOURNAL

Regulation of primary plant metabolism during plant-pathogen interactions and its contribution to plant defense

(2014) Clemencia M. Rojas et al.   Frontiers in Plant Science

Pathogenicity and infection strategies of the fire blight pathogen Erwinia amylovora in Rosaceae: State of the art

(2013) K. Vrancken et al.   MICROBIOLOGY-SGM

Identification of genetic loci associated with fire blight resistance inMalusthrough combined use of QTL and association mapping

(2013) M. Awais Khan et al.   PHYSIOLOGIA PLANTARUM

Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants

(2013) Mohammed Nuruzzaman et al.   Frontiers in Microbiology

Regulate and be regulated: integration of defense and other signals by the AtMYB30 transcription factor

(2013) Sylvain Raffaele et al.   Frontiers in Plant Science

Fire Blight: Applied Genomic Insights of the Pathogen and Host

(2012) Mickael Malnoy et al.   Annual Review of Phytopathology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Rootstock-regulated gene expression patterns associated with fire blight resistance in apple

(2012) Philip J Jensen et al.   BMC GENOMICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

A candidate gene for fire blight resistance in Malus × robusta 5 is coding for a CC–NBS–LRR

(2012) Johannes Fahrentrapp et al.   Tree Genetics & Genomes

Expression profiles of differentially regulated genes during the early stages of apple flower infection with Erwinia amylovora

(2011) Sujon Sarowar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of serine/threonine kinase and nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in the fire blight resistance quantitative trait locus of apple cultivar ‘Evereste’

(2011) GABRIELLA PARRAVICINI et al.   MOLECULAR PLANT PATHOLOGY

Gene Expression is Highly Regulated in Early Developing Fruit of Apple

(2011) Ruth Elena Soria-Guerra et al.   PLANT MOLECULAR BIOLOGY REPORTER

Molecular Mechanisms of Pathogenesis and Resistance to the Bacterial Pathogen Erwinia amylovora, Causal Agent of Fire Blight Disease in Rosaceae

(2011) M. Awais Khan et al.   PLANT MOLECULAR BIOLOGY REPORTER

Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus × domestica) with Erwinia amylovora

(2010) Angela Baldo et al.   BMC PLANT BIOLOGY

Mapping of quantitative trait loci for fire blight resistance in the apple cultivars ‘Florina’ and ‘Nova Easygro’

(2010) P.-M. F. Le Roux et al.   GENOME

Genotyping of pedigreed apple breeding material with a genome-covering set of SSRs: trueness-to-type of cultivars and their parentages

(2010) K. M. Evans et al.   MOLECULAR BREEDING

Two distinct major QTL for resistance to fire blight co-localize on linkage group 12 in apple genotypes ‘Evereste’ and Malus floribunda clone 821

(2009) C.-E. Durel et al.   GENOME

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Rapid transcriptional response of apple to fire blight disease revealed by cDNA suppression subtractive hybridization analysis

(2008) John L. Norelli et al.   Tree Genetics & Genomes