The survey and reference assisted assembly of the Octopus vulgaris genome

Symbiotic organs shaped by distinct modes of genome evolution in cephalopods

(2019) Mahdi Belcaid et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nerve regeneration in the cephalopod mollusc Octopus vulgaris: label-free multiphoton microscopy as a tool for investigation

(2018) Pamela Imperadore et al.   Journal of the Royal Society Interface

Cephalopod Tissue Regeneration: Consolidating Over a Century of Knowledge

(2018) Pamela Imperadore et al.   Frontiers in Physiology

The Current State of Cephalopod Science and Perspectives on the Most Critical Challenges Ahead From Three Early-Career Researchers

(2018) Caitlin E. O’Brien et al.   Frontiers in Physiology

Cephalopod Brains: An Overview of Current Knowledge to Facilitate Comparison With Vertebrates

(2018) Shuichi Shigeno et al.   Frontiers in Physiology

Genus-level phylogeny of cephalopods using molecular markers: current status and problematic areas

(2018) Gustavo Sanchez et al.   PeerJ

The genome of common long-arm octopus Octopus minor

(2018) Bo-Mi Kim et al.   GigaScience

An Annotated Draft Genome for Radix auricularia (Gastropoda, Mollusca)

(2017) Tilman Schell et al.   Genome Biology and Evolution

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

(2017) Shaun D. Jackman et al.   GENOME RESEARCH

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, Limnoperna fortunei

(2017) Marcela Uliano-Silva et al.   GigaScience

The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization

(2017) Xiaodong Du et al.   GigaScience

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

(2017) Yuxin Chen et al.   GigaScience

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

(2017) Jin Sun et al.   Nature Ecology & Evolution

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

Genome-wide identification, characterization and expression analyses of two TNFRs in Yesso scallop (Patinopecten yessoensis) provide insight into the disparity of responses to bacterial infections and heat stress in bivalves

(2016) Qiang Xing et al.   FISH & SHELLFISH IMMUNOLOGY

Redundans: an assembly pipeline for highly heterozygous genomes

(2016) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

Octopus vulgaris (Cuvier, 1797) in the Mediterranean Sea: Genetic Diversity and Population Structure

(2016) Daniele De Luca et al.   PLoS One

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

Morphological assessment of theOctopus vulgarisspecies complex evaluated in light of molecular-based phylogenetic inferences

(2016) Michael D. Amor et al.   ZOOLOGICA SCRIPTA

The venomous cocktail of the vampire snail Colubraria reticulata (Mollusca, Gastropoda)

(2015) Maria Vittoria Modica et al.   BMC GENOMICS

Learning and memory in Octopus vulgaris: a case of biological plasticity

(2015) Ilaria Zarrella et al.   CURRENT OPINION IN NEUROBIOLOGY

Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica

(2015) Marta Gómez-Chiarri et al.   FISH & SHELLFISH IMMUNOLOGY

De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

(2015) Clément Goubert et al.   Genome Biology and Evolution

Guidelines for the Care and Welfare of Cephalopods in Research –A consensus based on an initiative by CephRes, FELASA and the Boyd Group

(2015) Graziano Fiorito et al.   LABORATORY ANIMALS

Structural features of conopeptide genes inferred from partial sequences of the Conus tribblei genome

(2015) Neda Barghi et al.   MOLECULAR GENETICS AND GENOMICS

The octopus genome and the evolution of cephalopod neural and morphological novelties

(2015) Caroline B. Albertin et al.   NATURE

Evidence for a cordal, not ganglionic, pattern of cephalopod brain neurogenesis

(2015) Shuichi Shigeno et al.   Zoological Letters

Using Massive Parallel Sequencing for the Development, Validation, and Application of Population Genetics Markers in the Invasive Bivalve Zebra Mussel (Dreissena polymorpha)

(2015) Luis Peñarrubia et al.   PLoS One

Exploring genome characteristics and sequence quality without a reference

(2014) Jared T. Simpson   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The contribution of molecular data to our understanding of cephalopod evolution and systematics: a review

(2014) A. Louise Allcock et al.   JOURNAL OF NATURAL HISTORY

The complete mitochondrial genome ofPomacea canaliculata(Gastropoda: Ampullariidae)

(2014) Xuming Zhou et al.   Mitochondrial DNA

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Cephalopod neurobiology: an introduction for biologists working in other model systems

(2013) Christine L. Huffard   INVERTEBRATE NEUROSCIENCE

The identification and management of pain, suffering and distress in cephalopods, including anaesthesia, analgesia and humane killing

(2013) Paul L.R. Andrews et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Sequencing and De Novo Assembly of the Asian Clam (Corbicula fluminea) Transcriptome Using the Illumina GAIIx Method

(2013) Huihui Chen et al.   PLoS One

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A Role for A-to-I RNA Editing in Temperature Adaptation

(2012) Sandra C. Garrett et al.   PHYSIOLOGY

De Novo Sequencing and Transcriptome Analysis of the Central Nervous System of Mollusc Lymnaea stagnalis by Deep RNA Sequencing

(2012) Hisayo Sadamoto et al.   PLoS One

RNA Editing Underlies Temperature Adaptation in K+ Channels from Polar Octopuses

(2012) S. Garrett et al.   SCIENCE

Cephalopod genomics: A plan of strategies and organization

(2012) Caroline B. Albertin et al.   Standards in Genomic Sciences

Cephalopod origin and evolution: A congruent picture emerging from fossils, development and molecules

(2011) Björn Kröger et al.   BIOESSAYS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Genome structure analysis of molluscs revealed whole genome duplication and lineage specific repeat variation

(2011) Masa-aki Yoshida et al.   GENE

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Animal consciousness: a synthetic approach

(2009) David B. Edelman et al.   TRENDS IN NEUROSCIENCES