The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services

Age-related macular degeneration affects the optic radiation white matter projecting to locations of retinal damage

(2018) Shoyo Yoshimine et al.   Brain Structure & Function

Framework for shape analysis of white matter fiber bundles

(2018) Tanya Glozman et al.   NEUROIMAGE

Distinct neural circuits support incentivized inhibition

(2018) Josiah K. Leong et al.   NEUROIMAGE

Recognition of white matter bundles using local and global streamline-based registration and clustering

(2018) Eleftherios Garyfallidis et al.   NEUROIMAGE

A browser-based tool for visualization and analysis of diffusion MRI data

(2018) Jason D. Yeatman et al.   Nature Communications

White Matter Tract Segmentation as Multiple Linear Assignment Problems

(2018) Nusrat Sharmin et al.   Frontiers in Neuroscience

Shape-Attributes of Brain Structures as Biomarkers for Alzheimer’s Disease

(2017) Tanya Glozman et al.   JOURNAL OF ALZHEIMERS DISEASE

The visual white matter: The application of diffusion MRI and fiber tractography to vision science

(2017) Ariel Rokem et al.   JOURNAL OF VISION

Toward standard practices for sharing computer code and programs in neuroscience

(2017) Stephen J Eglen et al.   NATURE NEUROSCIENCE

Best practices in data analysis and sharing in neuroimaging using MRI

(2017) Thomas E Nichols et al.   NATURE NEUROSCIENCE

Network neuroscience

(2017) Danielle S Bassett et al.   NATURE NEUROSCIENCE

Fluctuations between high- and low-modularity topology in time-resolved functional connectivity

(2017) Makoto Fukushima et al.   NEUROIMAGE

Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group

(2017) Susan D. Shenkin et al.   NEUROIMAGE

The Cambridge Centre for Ageing and Neuroscience (Cam-CAN) data repository: Structural and functional MRI, MEG, and cognitive data from a cross-sectional adult lifespan sample

(2017) Jason R. Taylor et al.   NEUROIMAGE

Tradeoffs in pushing the spatial resolution of fMRI for the 7T Human Connectome Project

(2017) An T. Vu et al.   NEUROIMAGE

Data upcycling

(2017) Julian Vearncombe et al.   ORE GEOLOGY REVIEWS

The challenge of mapping the human connectome based on diffusion tractography

(2017) Klaus H. Maier-Hein et al.   Nature Communications

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods

(2017) Krzysztof J. Gorgolewski et al.   PLoS Computational Biology

DTI measures identify mild and moderate TBI cases among patients with complex health problems: A receiver operating characteristic analysis of U.S. veterans

(2017) Keith L. Main et al.   NeuroImage-Clinical

Science in the cloud (SIC): A use case in MRI connectomics

(2017) Gregory Kiar et al.   GigaScience

Singularity: Scientific containers for mobility of compute

(2017) Gregory M. Kurtzer et al.   PLoS One

Multidimensional encoding of brain connectomes

(2017) Cesar F. Caiafa et al.   Scientific Reports

Clarifying Human White Matter

(2016) Brian A. Wandell   Annual Review of Neuroscience

Brain network analysis: a practical tutorial

(2016) Danielle S. Bassett   BRAIN

The white matter query language: a novel approach for describing human white matter anatomy

(2016) Demian Wassermann et al.   Brain Structure & Function

The first step for neuroimaging data analysis: DICOM to NIfTI conversion

(2016) Xiangrui Li et al.   JOURNAL OF NEUROSCIENCE METHODS

The Human Connectome Project's neuroimaging approach

(2016) Matthew F Glasser et al.   NATURE NEUROSCIENCE

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

(2016) Karla L Miller et al.   NATURE NEUROSCIENCE

Generative models of the human connectome

(2016) Richard F. Betzel et al.   NEUROIMAGE

Connectome sensitivity or specificity: which is more important?

(2016) Andrew Zalesky et al.   NEUROIMAGE

White-Matter Tract Connecting Anterior Insula to Nucleus Accumbens Correlates with Reduced Preference for Positively Skewed Gambles

(2016) Josiah K. Leong et al.   NEURON

Structural Brain Network: What is the Effect of LiFE Optimization of Whole Brain Tractography?

(2016) Shouliang Qi et al.   Frontiers in Computational Neuroscience

Ensemble Tractography

(2016) Hiromasa Takemura et al.   PLoS Computational Biology

Alignment of Tractograms As Graph Matching

(2016) Emanuele Olivetti et al.   Frontiers in Neuroscience

A test-retest dataset for assessing long-term reliability of brain morphology and resting-state brain activity

(2016) Lijie Huang et al.   Scientific Data

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

(2016) Krzysztof J. Gorgolewski et al.   Scientific Data

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

A Major Human White Matter Pathway Between Dorsal and Ventral Visual Cortex

(2015) Hiromasa Takemura et al.   CEREBRAL CORTEX

Open source tools for large-scale neuroscience

(2015) Jeremy Freeman   CURRENT OPINION IN NEUROBIOLOGY

Strengths and weaknesses of state of the art fiber tractography pipelines – A comprehensive in-vivo and phantom evaluation study using Tractometer

(2015) Peter F. Neher et al.   MEDICAL IMAGE ANALYSIS

The connectomics of brain disorders

(2015) Alex Fornito et al.   NATURE REVIEWS NEUROSCIENCE

High resolution whole brain diffusion imaging at 7 T for the Human Connectome Project

(2015) A.T. Vu et al.   NEUROIMAGE

Robust and efficient linear registration of white-matter fascicles in the space of streamlines

(2015) Eleftherios Garyfallidis et al.   NEUROIMAGE

Improving reliability of subject-level resting-state fMRI parcellation with shrinkage estimators

(2015) Amanda F. Mejia et al.   NEUROIMAGE

Functionally Defined White Matter Reveals Segregated Pathways in Human Ventral Temporal Cortex Associated with Category-Specific Processing

(2015) Jesse Gomez et al.   NEURON

Superficial white matter fiber systems impede detection of long-range cortical connections in diffusion MR tractography

(2015) Colin Reveley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Promoting an open research culture

(2015) B. A. Nosek et al.   SCIENCE

Self-portraits of the brain: cognitive science, data visualization, and communicating brain structure and function

(2015) Robert L. Goldstone et al.   TRENDS IN COGNITIVE SCIENCES

Altered white matter in early visual pathways of humans with amblyopia

(2015) Brian Allen et al.   VISION RESEARCH

Human blindsight is mediated by an intact geniculo-extrastriate pathway

(2015) Sara Ajina et al.   eLife

Improving functional magnetic resonance imaging reproducibility

(2015) Cyril Pernet et al.   GigaScience

Test-retest measurements and digital validation for in vivo neuroscience

(2015) Franco Pestilli   Scientific Data

Evaluating the Accuracy of Diffusion MRI Models in White Matter

(2015) Ariel Rokem et al.   PLoS One

Dipy, a library for the analysis of diffusion MRI data

(2015) Eleftherios Garyfallidis et al.   Frontiers in Neuroinformatics

XSEDE: Accelerating Scientific Discovery

(2014) John Towns et al.   COMPUTING IN SCIENCE & ENGINEERING

Evaluation and statistical inference for human connectomes

(2014) Franco Pestilli et al.   NATURE METHODS

Focus on big data

(2014)   NATURE NEUROSCIENCE

Making big data open: data sharing in neuroimaging

(2014) Russell A Poldrack et al.   NATURE NEUROSCIENCE

Putting big data to good use in neuroscience

(2014) Terrence J Sejnowski et al.   NATURE NEUROSCIENCE

Big data from small data: data-sharing in the 'long tail' of neuroscience

(2014) Adam R Ferguson et al.   NATURE NEUROSCIENCE

Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited

(2014) Cibu Thomas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UK Biobank Data: Come and Get It

(2014) N. E. Allen et al.   Science Translational Medicine

Tractometer: Towards validation of tractography pipelines

(2013) Marc-Alexandre Côté et al.   MEDICAL IMAGE ANALYSIS

The ethics of secondary data analysis: Considering the application of Belmont principles to the sharing of neuroimaging data

(2013) Beth Brakewood et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

Visualizing the human connectome

(2013) Daniel S. Margulies et al.   NEUROIMAGE

The minimal preprocessing pipelines for the Human Connectome Project

(2013) Matthew F. Glasser et al.   NEUROIMAGE

Advances in diffusion MRI acquisition and processing in the Human Connectome Project

(2013) Stamatios N. Sotiropoulos et al.   NEUROIMAGE

Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project

(2013) Kamil Uğurbil et al.   NEUROIMAGE

Test–retest reliability of structural brain networks from diffusion MRI

(2013) Colin R. Buchanan et al.   NEUROIMAGE

Toward open sharing of task-based fMRI data: the OpenfMRI project

(2013) Russell A. Poldrack et al.   Frontiers in Neuroinformatics

A test-retest fMRI dataset for motor, language and spatial attention functions

(2013) Krzysztof J Gorgolewski et al.   GigaScience

MRtrix: Diffusion tractography in crossing fiber regions

(2012) J-Donald Tournier et al.   INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY

Human cortical connectome reconstruction from diffusion weighted MRI: The effect of tractography algorithm

(2012) Matteo Bastiani et al.   NEUROIMAGE

Characteristics and variability of structural networks derived from diffusion tensor imaging

(2012) Hu Cheng et al.   NEUROIMAGE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

White matter integrity, fiber count, and other fallacies: The do's and don'ts of diffusion MRI

(2012) Derek K. Jones et al.   NEUROIMAGE

Tract Profiles of White Matter Properties: Automating Fiber-Tract Quantification

(2012) Jason D. Yeatman et al.   PLoS One

Open is Not Enough. Let's Take the Next Step: An Integrated, Community-Driven Computing Platform for Neuroscience

(2012) Yaroslav O. Halchenko et al.   Frontiers in Neuroinformatics

Diffusion Imaging, White Matter, and Psychopathology

(2011) Moriah E. Thomason et al.   Annual Review of Clinical Psychology

Rich-Club Organization of the Human Connectome

(2011) M. P. van den Heuvel et al.   JOURNAL OF NEUROSCIENCE

A lateralized brain network for visuospatial attention

(2011) Michel Thiebaut de Schotten et al.   NATURE NEUROSCIENCE

Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom

(2011) Pierre Fillard et al.   NEUROIMAGE

Understanding complexity in the human brain

(2011) Danielle S. Bassett et al.   TRENDS IN COGNITIVE SCIENCES

Informatics and Data Mining Tools and Strategies for the Human Connectome Project

(2011) Daniel S. Marcus et al.   Frontiers in Neuroinformatics

Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python

(2011) Krzysztof Gorgolewski et al.   Frontiers in Neuroinformatics

The Alzheimer's Disease Neuroimaging Initiative: Progress report and future plans

(2010) Michael W. Weiner et al.   Alzheimers & Dementia

Identification of optic radiation in-vivo using diffusion tensor imaging and fiber tractography

(2010) A. Sherbondy et al.   JOURNAL OF VISION

Multiple q-shell diffusion propagator imaging

(2010) Maxime Descoteaux et al.   MEDICAL IMAGE ANALYSIS

Toward discovery science of human brain function

(2010) B. B. Biswal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human brain networks in health and disease

(2009) Danielle S Bassett et al.   CURRENT OPINION IN NEUROLOGY

Complex brain networks: graph theoretical analysis of structural and functional systems

(2009) Ed Bullmore et al.   NATURE REVIEWS NEUROSCIENCE

Complex network measures of brain connectivity: Uses and interpretations

(2009) Mikail Rubinov et al.   NEUROIMAGE

Deterministic and Probabilistic Tractography Based on Complex Fibre Orientation Distributions

(2008) M. Descoteaux et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Automated fiber tracking of human brain white matter using diffusion tensor imaging

(2008) Weihong Zhang et al.   NEUROIMAGE

Resolving crossing fibres using constrained spherical deconvolution: Validation using diffusion-weighted imaging phantom data

(2008) J.-Donald Tournier et al.   NEUROIMAGE

Mapping the Structural Core of Human Cerebral Cortex

(2008) Patric Hagmann et al.   PLOS BIOLOGY