PseudoFuN: Deriving functional potentials of pseudogenes from integrative relationships with genes and microRNAs across 32 cancers

PseudoFuN: Deriving functional potentials of pseudogenes from integrative relationships with genes and microRNAs across 32 cancers

(2019) Travis S Johnson et al.   GigaScience

Noncoding RNA:RNA Regulatory Networks in Cancer

(2018) Jia Chan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Massive mining of publicly available RNA-seq data from human and mouse

(2018) Alexander Lachmann et al.   Nature Communications

The miR-96 and RARγ signaling axis governs androgen signaling and prostate cancer progression

(2018) Mark D. Long et al.   ONCOGENE

dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease

(2017) Ling-Ling Zheng et al.   NUCLEIC ACIDS RESEARCH

A FTH1 gene:pseudogene:microRNA network regulates tumorigenesis in prostate cancer

(2017) Jia Jia Chan et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

MiR-106b and miR-93 regulate cell progression by suppression of PTEN via PI3K/Akt pathway in breast cancer

(2017) Nana Li et al.   Cell Death & Disease

Identification of potential cancer-related pseudogenes in lung adenocarcinoma based on ceRNA hypothesis

(2017) Yunzhen Wei et al.   Oncotarget

Landscape and variation of novel retroduplications in 26 human populations

(2017) Yan Zhang et al.   PLoS Computational Biology

Pseudogenes regulate parental gene expressionviaceRNA network

(2016) Yang An et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

miR-375 induces docetaxel resistance in prostate cancer by targeting SEC23A and YAP1

(2016) Yuan Wang et al.   Molecular Cancer

Toward a Shared Vision for Cancer Genomic Data

(2016) Robert L. Grossman et al.   NEW ENGLAND JOURNAL OF MEDICINE

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Expression of Ferritin Light Chain (FTL) Is Elevated in Glioblastoma, and FTL Silencing Inhibits Glioblastoma Cell Proliferation via the GADD45/JNK Pathway

(2016) Tingfeng Wu et al.   PLoS One

Knockdown of long non-coding RNA TP73-AS1 inhibits cell proliferation and induces apoptosis in esophageal squamous cell carcinoma

(2016) Wenqiao Zang et al.   Oncotarget

The Genotype-Tissue Expression (GTEx) Project

(2015) Latarsha J. Carithers et al.   BIOPRESERVATION AND BIOBANKING

Pseudogenes transcribed in breast invasive carcinoma show subtype-specific expression and ceRNA potential

(2015) Joshua D Welch et al.   BMC GENOMICS

Cytomegalovirus Immediate-Early Proteins Promote Stemness Properties in Glioblastoma

(2015) L. Soroceanu et al.   CANCER RESEARCH

PTEN ceRNA networks in human cancer

(2015) Laura Poliseno et al.   METHODS

The Genotype-Tissue Expression (GTEx) Project

(2015) Latarsha J. Carithers et al.   Biopreservation and Biobanking

MicroRNA-375 plays a dual role in prostate carcinogenesis

(2015) Pedro Costa-Pinheiro et al.   Clinical Epigenetics

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

Ferritin light-chain subunits: key elements for the electron transfer across the protein cage

(2014) Unai Carmona et al.   CHEMICAL COMMUNICATIONS

MicroRNA-103 Promotes Colorectal Cancer by Targeting Tumor Suppressor DICER and PTEN

(2014) Li Geng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MicroRNA-145: a potent tumour suppressor that regulates multiple cellular pathways

(2014) Shi-Yun Cui et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Comparative analysis of pseudogenes across three phyla

(2014) Cristina Sisu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes

(2014) Leng Han et al.   Nature Communications

Processed pseudogenes acquired somatically during cancer development

(2014) Susanna L. Cooke et al.   Nature Communications

Pseudogene OCT4-pg4 functions as a natural micro RNA sponge to regulate OCT4 expression by competing for miR-145 in hepatocellular carcinoma

(2013) Lei Wang et al.   CARCINOGENESIS

Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma

(2013) Ruchi Shukla et al.   CELL

Up-regulation of SUMO1 pseudogene 3 (SUMO1P3) in gastric cancer and its clinical association

(2013) Danyi Mei et al.   MEDICAL ONCOLOGY

The Cancer Genome Atlas Pan-Cancer analysis project

(2013) John N Weinstein et al.   NATURE GENETICS

Deciphering the rules of ceRNA networks

(2013) M. Cesana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers

(2012) Shanker Kalyana-Sundaram et al.   CELL

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

The GENCODE pseudogene resource

(2012) Baikang Pei et al.   GENOME BIOLOGY

Non-coding RNA and pseudogenes in neurodegenerative diseases: “The (un)Usual Suspects”

(2012) Valerio Costa et al.   Frontiers in Genetics

Pseudogenes: Pseudo-functional or key regulators in health and disease?

(2011) R. C. Pink et al.   RNA

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

(2010) Laura Poliseno et al.   NATURE

Interferon-α counteracts the angiogenic switch and reduces tumor cell proliferation in a spontaneous model of prostatic cancer

(2009) Luca Persano et al.   CARCINOGENESIS

Retrocopy contributions to the evolution of the human genome

(2008) Robert Baertsch et al.   BMC GENOMICS

Pseudofam: the pseudogene families database

(2008) Hugo Y. K. Lam et al.   NUCLEIC ACIDS RESEARCH