The GENCODE pseudogene resource

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Functional evidence of post-transcriptional regulation by pseudogenes

(2011) Enrique M. Muro et al.   BIOCHIMIE

A transcribed pseudogene of MYLK promotes cell proliferation

(2011) Yoo Jeong Han et al.   FASEB JOURNAL

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries

(2010) Lukas Habegger et al.   BIOINFORMATICS

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

(2010) Laura Poliseno et al.   NATURE

The International Nucleotide Sequence Database Collaboration

(2010) G. Cochrane et al.   NUCLEIC ACIDS RESEARCH

Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates

(2010) Zhengdong D Zhang et al.   GENOME BIOLOGY

Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity

(2009) Yuen-Jong Liu et al.   BMC GENOMICS

Small RNAs Originated from Pseudogenes: cis- or trans-Acting?

(2009) Xingyi Guo et al.   PLoS Computational Biology

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

(2009) Suganthi Balasubramanian et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference

(2008) Armin P Piehler et al.   BMC GENOMICS

Retrocopy contributions to the evolution of the human genome

(2008) Robert Baertsch et al.   BMC GENOMICS

Tenets of PTEN Tumor Suppression

(2008) Leonardo Salmena et al.   CELL

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

(2008) P. M. Kim et al.   GENOME RESEARCH

Genomics: Protein fossils live on as RNA

(2008) Rajkumar Sasidharan et al.   NATURE

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

(2008) Toshiaki Watanabe et al.   NATURE

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

(2008) Oliver H. Tam et al.   NATURE