Experimental Analysis of Viral–Host Interactions

Proximity labeling: spatially resolved proteomic mapping for neurobiology

(2018) Shuo Han et al.   CURRENT OPINION IN NEUROBIOLOGY

The interactome of EBV LMP1 evaluated by proximity-based BioID approach

(2018) Mark A. Rider et al.   VIROLOGY

An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations

(2018) Xiaonan Liu et al.   Nature Communications

Global interactomics uncovers extensive organellar targeting by Zika virus

(2018) Etienne Coyaud et al.   MOLECULAR & CELLULAR PROTEOMICS

Efficient proximity labeling in living cells and organisms with TurboID

(2018) Tess C Branon et al.   NATURE BIOTECHNOLOGY

Viruses.STRING: A Virus-Host Protein-Protein Interaction Database

(2018) Helen Cook et al.   Viruses-Basel

Human Antiviral Protein IFIX Suppresses Viral Gene Expression during Herpes Simplex Virus 1 (HSV-1) Infection and Is Counteracted by Virus-induced Proteasomal Degradation

(2017) Marni S. Crow et al.   MOLECULAR & CELLULAR PROTEOMICS

Biotinylation by antibody recognition—a method for proximity labeling

(2017) Daniel Z Bar et al.   NATURE METHODS

Host–Pathogen Interaction Profiling Using Self-Assembling Human Protein Arrays

(2015) Xiaobo Yu et al.   JOURNAL OF PROTEOME RESEARCH

A Survey of the Interactome of Kaposi's Sarcoma-Associated Herpesvirus ORF45 Revealed Its Binding to Viral ORF33 and Cellular USP7, Resulting in Stabilization of ORF33 That Is Required for Production of Progeny Viruses

(2015) Joseph Gillen et al.   JOURNAL OF VIROLOGY

Protein Neighbors and Proximity Proteomics

(2015) Johanna S. Rees et al.   MOLECULAR & CELLULAR PROTEOMICS

Interactome Analysis of the Human Respiratory Syncytial Virus RNA Polymerase Complex Identifies Protein Chaperones as Important Cofactors That Promote L-Protein Stability and RNA Synthesis

(2014) Diane C. Munday et al.   JOURNAL OF VIROLOGY

Directed evolution of APEX2 for electron microscopy and proximity labeling

(2014) Stephanie S Lam et al.   NATURE METHODS

Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions

(2014) John H Morris et al.   Nature Protocols

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Exploration of Panviral Proteome: High-Throughput Cloning and Functional Implications in Virus-host Interactions

(2014) Xiaobo Yu et al.   Theranostics

An integrated proteomics and bioinformatics analyses of hepatitis B virus X interacting proteins and identification of a novel interactor apoA-I

(2013) Tao Zhang et al.   Journal of Proteomics

The CRAPome: a contaminant repository for affinity purification–mass spectrometry data

(2013) Dattatreya Mellacheruvu et al.   NATURE METHODS

Popular Computational Methods to Assess Multiprotein Complexes Derived From Label-Free Affinity Purification and Mass Spectrometry (AP-MS) Experiments

(2012) Irina M. Armean et al.   MOLECULAR & CELLULAR PROTEOMICS

Viral immune modulators perturb the human molecular network by common and unique strategies

(2012) Andreas Pichlmair et al.   NATURE

Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy

(2012) Jeffrey D Martell et al.   NATURE BIOTECHNOLOGY

Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments

(2012) Alexey I. Nesvizhskii   PROTEOMICS

Global landscape of HIV–human protein complexes

(2011) Stefanie Jäger et al.   NATURE

A proteomics approach to the cell-surface interactome using the enzyme-mediated activation of radical sources reaction

(2011) Songlin Jiang et al.   PROTEOMICS

SAINT: probabilistic scoring of affinity purification–mass spectrometry data

(2010) Hyungwon Choi et al.   NATURE METHODS

Defining the Human Deubiquitinating Enzyme Interaction Landscape

(2009) Mathew E. Sowa et al.   CELL

In vitro nuclear interactome of the HIV-1 Tat protein

(2009) Virginie W Gautier et al.   Retrovirology

Identification of Intracellular Proteins Associated with the EBV-Encoded Nuclear Antigen 5 Using an Efficient TAP Procedure and FT-ICR Mass Spectrometry

(2008) Alma Forsman et al.   JOURNAL OF PROTEOME RESEARCH

Virion-Wide Protein Interactions of Kaposi's Sarcoma-Associated Herpesvirus

(2008) R. Rozen et al.   JOURNAL OF VIROLOGY

Cdc34p Ubiquitin-Conjugating Enzyme Is a Component of the Tombusvirus Replicase Complex and Ubiquitinates p33 Replication Protein

(2008) Z. Li et al.   JOURNAL OF VIROLOGY

Hepatitis C virus infection protein network

(2008) B de Chassey et al.   Molecular Systems Biology