DeepBouton: Automated Identification of Single-Neuron Axonal Boutons at the Brain-Wide Scale

FluoEM, virtual labeling of axons in three-dimensional electron microscopy data for long-range connectomics

(2018) Florian Drawitsch et al.   eLife

Automated synaptic connectivity inference for volume electron microscopy

(2017) Sven Dorkenwald et al.   NATURE METHODS

Computer assisted detection of axonal bouton structural plasticity in in vivo time-lapse images

(2017) Rohan Gala et al.   eLife

Embedding and Chemical Reactivation of Green Fluorescent Protein in the Whole Mouse Brain for Optical Micro-Imaging

(2017) Yadong Gang et al.   Frontiers in Neuroscience

Detection of axonal synapses in 3D two-photon images

(2017) Cher Bass et al.   PLoS One

Large-scale localization of touching somas from 3D images using density-peak clustering

(2016) Shenghua Cheng et al.   BMC BIOINFORMATICS

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level

(2016) Hui Gong et al.   Nature Communications

A platform for brain-wide imaging and reconstruction of individual neurons

(2016) Michael N Economo et al.   eLife

Reconstruction and Simulation of Neocortical Microcircuitry

(2015) Henry Markram et al.   CELL

Deep learning

(2015) Yann LeCun et al.   NATURE

EPBscore: a Novel Method for Computer-Assisted Analysis of Axonal Structure and Dynamics

(2015) S. Song et al.   NEUROINFORMATICS

BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images

(2015) Hanchuan Peng et al.   NEURON

Rapid imaging of large tissues using high-resolution stage-scanning microscopy

(2015) Tao Yang et al.   Biomedical Optics Express

Toward a Genetic Dissection of Cortical Circuits in the Mouse

(2014) Z. Josh Huang   NEURON

Clustering by fast search and find of density peaks

(2014) A. Rodriguez et al.   SCIENCE

Chemical reactivation of quenched fluorescent protein molecules enables resin-embedded fluorescence microimaging

(2014) Hanqing Xiong et al.   Nature Communications

Mapping brain circuitry with a light microscope

(2013) Pavel Osten et al.   NATURE METHODS

Increased axonal bouton dynamics in the aging mouse cortex

(2013) F. W. Grillo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Computational methods and challenges for large-scale circuit mapping

(2012) Moritz Helmstaedter et al.   CURRENT OPINION IN NEUROBIOLOGY

Neuromantic – from Semi-Manual to Semi-Automatic Reconstruction of Neuron Morphology

(2012) Darren R. Myatt et al.   Frontiers in Neuroinformatics

Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images

(2011) Anna Kreshuk et al.   PLoS One

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

Automated reconstruction of neuronal morphology: An overview

(2010) Duncan E. Donohue et al.   BRAIN RESEARCH REVIEWS

Establishing a Novel Modeling Tool: A Python-based Interface for a Neuromorphic Hardware System

(2009) Daniel Bruederle   Frontiers in Neuroinformatics

Genetically-Directed, Cell Type-Specific Sparse Labeling for the Analysis of Neuronal Morphology

(2008) Thomas Rotolo et al.   PLoS One

Brian: a simulator for spiking neural networks in Python

(2008) Dan Goodman   Frontiers in Neuroinformatics