Validation of Genotyping by Sequencing Using Transcriptomics for Diversity and Application of Genomic Selection in Tetraploid Potato

Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato

(2018) Jeffrey B. Endelman et al.   GENETICS

Genomic Prediction Using Prior Quantitative Trait Loci Information Reveals a Large Reservoir of Underutilised Blackleg Resistance in Diverse Canola ( L.) Lines

(2018) Mulusew Fikere et al.   Plant Genome

Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato

(2018) Jeffrey B. Endelman et al.   GENETICS

Genotyping-by-sequencing through transcriptomics: implementation in a range of crop species with varying reproductive habits and ploidy levels

(2017) M. Michelle Malmberg et al.   PLANT BIOTECHNOLOGY JOURNAL

Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing

(2017) Elsa Sverrisdóttir et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection

(2016) Adriana García-Ruiz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A highly robust and optimized sequence-based approach for genetic polymorphism discovery and genotyping in large plant populations

(2016) Ning Jiang et al.   THEORETICAL AND APPLIED GENETICS

Genetic Gain and Inbreeding from Genomic Selection in a Simulated Commercial Breeding Program for Perennial Ryegrass

(2016) Zibei Lin et al.   Plant Genome

Improving Genetic Gain with Genomic Selection in Autotetraploid Potato

(2016) Anthony T. Slater et al.   Plant Genome

Software for Genome-Wide Association Studies in Autopolyploids and Its Application to Potato

(2016) Umesh R. Rosyara et al.   Plant Genome

Review of Potato Molecular Markers to Enhance Trait Selection

(2015) Alisa P. Ramakrishnan et al.   AMERICAN JOURNAL OF POTATO RESEARCH

Single Nucleotide Polymorphism Identification in Polyploids: A Review, Example, and Recommendations

(2015) Josh Clevenger et al.   Molecular Plant

Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history

(2015) Peter G. Vos et al.   THEORETICAL AND APPLIED GENETICS

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes

(2014) C. D. Hirsch et al.   Briefings in Functional Genomics

Improving breeding efficiency in potato using molecular and quantitative genetics

(2014) Anthony T. Slater et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection in crops, trees and forages: a review

(2014) Z. Lin et al.   Crop & Pasture Science

SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it

(2013) Joseph Lachance et al.   BIOESSAYS

Genomic Predictability of Interconnected Biparental Maize Populations

(2013) C. Riedelsheimer et al.   GENETICS

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

Cost analysis of the application of marker-assisted selection in potato breeding

(2013) Anthony T. Slater et al.   MOLECULAR BREEDING

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

Naturally occurring allele diversity allows potato cultivation in northern latitudes

(2013) Bjorn Kloosterman et al.   NATURE

Population structure and linkage disequilibrium in diploid and tetraploid potato revealed by genome-wide high-density genotyping using the SolCAP SNP array

(2013) Benjamin Stich et al.   PLANT BREEDING

A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato

(2013) Jan G. A. M. L. Uitdewilligen et al.   PLoS One

Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with Genetic and Physical Maps

(2013) Sanjeev Kumar Sharma et al.   G3-Genes Genomes Genetics

Retrospective View of North American Potato ( Solanum tuberosum L.) Breeding in the 20 th and 21 st Centuries

(2013) Candice N. Hirsch et al.   G3-Genes Genomes Genetics

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Evaluation and implementation of a potential diagnostic molecular marker for H1-conferred potato cyst nematode resistance in potato (Solanum tuberosum L.)

(2012) Lee Schultz et al.   PLANT BREEDING

Integration of Two Diploid Potato Linkage Maps with the Potato Genome Sequence

(2012) Kimberly J. Felcher et al.   PLoS One

Application of Molecular Marker-Assisted Selection (MAS) for Disease Resistance in a Practical Potato Breeding Programme

(2012) Felisa Ortega et al.   POTATO RESEARCH

A High-Throughput Method for Illumina RNA-Seq Library Preparation

(2012) Ravi Kumar et al.   Frontiers in Plant Science

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Targeted enrichment of genomic DNA regions for next-generation sequencing

(2011) F. Mertes et al.   Briefings in Functional Genomics

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Designing dairy cattle breeding schemes under genomic selection: a review of international research

(2011) J. E. Pryce et al.   Animal Production Science

The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

(2010) H. D. Daetwyler et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population structure and linkage disequilibrium unravelled in tetraploid potato

(2010) Björn B. D’hoop et al.   THEORETICAL AND APPLIED GENETICS

Challenges for effective marker-assisted selection in plants

(2008) Frédéric Hospital   GENETICA