NetPyNE, a tool for data-driven multiscale modeling of brain circuits
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
NetPyNE, a tool for data-driven multiscale modeling of brain circuits
Authors
Keywords
-
Journal
eLife
Volume 8, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2019-04-26
DOI
10.7554/elife.44494
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Systematic generation of biophysically detailed models for diverse cortical neuron types
- (2018) Nathan W. Gouwens et al. Nature Communications
- Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience
- (2018) Lealem Mulugeta et al. Frontiers in Neuroinformatics
- Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics
- (2018) Adam J. H. Newton et al. Frontiers in Neuroinformatics
- Geppetto: a reusable modular open platform for exploring neuroscience data and models
- (2018) Matteo Cantarelli et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- BioNet: A Python interface to NEURON for modeling large-scale networks
- (2018) Sergey L. Gratiy et al. PLoS One
- Modeling pathogenesis and treatment response in childhood absence epilepsy
- (2017) Andrew T. Knox et al. EPILEPSIA
- Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis
- (2017) S. Dura-Bernal et al. IBM JOURNAL OF RESEARCH AND DEVELOPMENT
- Optimizing computer models of corticospinal neurons to replicate in vitro dynamics
- (2017) Samuel A. Neymotin et al. JOURNAL OF NEUROPHYSIOLOGY
- Tau and amyloid-related pathologies in the entorhinal cortex have divergent effects in the hippocampal circuit
- (2017) S.L. Angulo et al. NEUROBIOLOGY OF DISEASE
- ARACHNE: A neural-neuroglial network builder with remotely controlled parallel computing
- (2017) Sergey G. Aleksin et al. PLoS Computational Biology
- Synaptic input sequence discrimination on behavioral timescales mediated by reaction-diffusion chemistry in dendrites
- (2017) Upinder Singh Bhalla eLife
- Software for Brain Network Simulations: A Comparative Study
- (2017) Ruben A. Tikidji-Hamburyan et al. Frontiers in Neuroinformatics
- Reproducibility in Computational Neuroscience Models and Simulations
- (2016) Robert A. McDougal et al. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING
- Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons
- (2016) Timothy H. Rumbell et al. JOURNAL OF COMPUTATIONAL NEUROSCIENCE
- Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience
- (2016) Robert A. McDougal et al. JOURNAL OF COMPUTATIONAL NEUROSCIENCE
- Conceptual and technical advances define a key moment for theoretical neuroscience
- (2016) Anne K Churchland et al. NATURE NEUROSCIENCE
- Blending computational and experimental neuroscience
- (2016) Patricia S. Churchland et al. NATURE REVIEWS NEUROSCIENCE
- Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON
- (2016) William W. Lytton et al. NEURAL COMPUTATION
- The Human Brain Project: Creating a European Research Infrastructure to Decode the Human Brain
- (2016) Katrin Amunts et al. NEURON
- Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex
- (2016) S.A. Neymotin et al. NEUROSCIENCE
- Inferring cortical function in the mouse visual system through large-scale systems neuroscience
- (2016) Michael Hawrylycz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Neural mechanisms of transient neocortical beta rhythms: Converging evidence from humans, computational modeling, monkeys, and mice
- (2016) Maxwell A. Sherman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim
- (2016) Harilal Parasuram et al. Frontiers in Computational Neuroscience
- Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit
- (2016) Marianne J Bezaire et al. eLife
- BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience
- (2016) Werner Van Geit et al. Frontiers in Neuroinformatics
- pypet: A Python Toolkit for Data Management of Parameter Explorations
- (2016) Robert Meyer et al. Frontiers in Neuroinformatics
- Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm
- (2016) Salvador Dura-Bernal et al. Frontiers in Neuroscience
- Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex
- (2016) Samuel A. Neymotin et al. Frontiers in Pharmacology
- Reconstruction and Simulation of Neocortical Microcircuitry
- (2015) Henry Markram et al. CELL
- SPIKY: a graphical user interface for monitoring spike train synchrony
- (2015) Thomas Kreuz et al. JOURNAL OF NEUROPHYSIOLOGY
- Reciprocal Interareal Connections to Corticospinal Neurons in Mouse M1 and S2
- (2015) B. A. Suter et al. JOURNAL OF NEUROSCIENCE
- Synaptic Circuit Organization of Motor Corticothalamic Neurons
- (2015) N. Yamawaki et al. JOURNAL OF NEUROSCIENCE
- The neocortical circuit: themes and variations
- (2015) Kenneth D Harris et al. NATURE NEUROSCIENCE
- ModelView for ModelDB: Online Presentation of Model Structure
- (2015) Robert A. McDougal et al. NEUROINFORMATICS
- NSDF: Neuroscience Simulation Data Format
- (2015) Subhasis Ray et al. NEUROINFORMATICS
- Functional effects of distinct innervation styles of pyramidal cells by fast spiking cortical interneurons
- (2015) Yoshiyuki Kubota et al. eLife
- Theory, models and biology
- (2015) Wenying Shou et al. eLife
- XSEDE: Accelerating Scientific Discovery
- (2014) John Towns et al. COMPUTING IN SCIENCE & ENGINEERING
- Dimensionality reduction for large-scale neural recordings
- (2014) John P Cunningham et al. NATURE NEUROSCIENCE
- Combined Role of Seizure-Induced Dendritic Morphology Alterations and Spine Loss in Newborn Granule Cells with Mossy Fiber Sprouting on the Hyperexcitability of a Computer Model of the Dentate Gyrus
- (2014) Julian Tejada et al. PLoS Computational Biology
- A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity
- (2014) Naoki Yamawaki et al. eLife
- A flexible, interactive software tool for fitting the parameters of neuronal models
- (2014) Péter Friedrich et al. Frontiers in Neuroinformatics
- LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2
- (2014) Robert C. Cannon et al. Frontiers in Neuroinformatics
- An efficient automated parameter tuning framework for spiking neural networks
- (2014) Kristofor D. Carlson et al. Frontiers in Neuroscience
- Molecular computation in neurons: a modeling perspective
- (2013) Upinder S Bhalla CURRENT OPINION IN NEUROBIOLOGY
- Organization of Cortical and Thalamic Input to Pyramidal Neurons in Mouse Motor Cortex
- (2013) B. M. Hooks et al. JOURNAL OF NEUROSCIENCE
- A Modeling Framework for Deriving the Structural and Functional Architecture of a Short-Term Memory Microcircuit
- (2013) Dimitry Fisher et al. NEURON
- Reaction-diffusion in the NEURON simulator
- (2013) Robert A. McDougal et al. Frontiers in Neuroinformatics
- Intrinsic Electrophysiology of Mouse Corticospinal Neurons: a Class-Specific Triad of Spike-Related Properties
- (2012) B. A. Suter et al. CEREBRAL CORTEX
- The Cell-Type Specific Cortical Microcircuit: Relating Structure and Activity in a Full-Scale Spiking Network Model
- (2012) Tobias C. Potjans et al. CEREBRAL CORTEX
- Cellular-based modeling of oscillatory dynamics in brain networks
- (2012) Frances K Skinner CURRENT OPINION IN NEUROBIOLOGY
- Hierarchical Connectivity and Connection-Specific Dynamics in the Corticospinal-Corticostriatal Microcircuit in Mouse Motor Cortex
- (2012) T. Kiritani et al. JOURNAL OF NEUROSCIENCE
- Laminarly Orthogonal Excitation of Fast-Spiking and Low-Threshold-Spiking Interneurons in Mouse Motor Cortex
- (2012) A. J. Apicella et al. JOURNAL OF NEUROSCIENCE
- The origin of extracellular fields and currents — EEG, ECoG, LFP and spikes
- (2012) György Buzsáki et al. NATURE REVIEWS NEUROSCIENCE
- Using Evolutionary Algorithms for Fitting High-Dimensional Models to Neuronal Data
- (2012) Carl-Magnus Svensson et al. NEUROINFORMATICS
- Corticospinal-specific HCN expression in mouse motor cortex: Ih-dependent synaptic integration as a candidate microcircuit mechanism involved in motor control
- (2011) Patrick L. Sheets et al. JOURNAL OF NEUROPHYSIOLOGY
- Emergence of Physiological Oscillation Frequencies in a Computer Model of Neocortex
- (2011) Samuel A. Neymotin et al. Frontiers in Computational Neuroscience
- Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer
- (2011) Michael Hines Frontiers in Computational Neuroscience
- Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex
- (2010) Charles T Anderson et al. NATURE NEUROSCIENCE
- NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail
- (2010) Padraig Gleeson et al. PLoS Computational Biology
- Quantitative Analysis and Biophysically Realistic Neural Modeling of the MEG Mu Rhythm: Rhythmogenesis and Modulation of Sensory-Evoked Responses
- (2009) Stephanie R. Jones et al. JOURNAL OF NEUROPHYSIOLOGY
- Dendritic Excitability and Neuronal Morphology as Determinants of Synaptic Efficacy
- (2009) Alexander O. Komendantov et al. JOURNAL OF NEUROPHYSIOLOGY
- The subcellular organization of neocortical excitatory connections
- (2009) Leopoldo Petreanu et al. NATURE
- Patterns and pauses in Purkinje cell simple spike trains: experiments, modeling and theory
- (2009) E. De Schutter et al. NEUROSCIENCE
- PyNN: a common interface for neuronal network simulators
- (2009) Andrew P Davison Frontiers in Neuroinformatics
- Topographica: building and analyzing map-level simulations from Python, C/C++, MATLAB, NEST, or NEURON components
- (2009) James A. Bednar Frontiers in Neuroinformatics
- Automated neuron model optimization techniques: a review
- (2008) W. Van Geit et al. BIOLOGICAL CYBERNETICS
- Firing patterns in the adaptive exponential integrate-and-fire model
- (2008) Richard Naud et al. BIOLOGICAL CYBERNETICS
- Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors
- (2008) Michael L. Hines et al. JOURNAL OF COMPUTATIONAL NEUROSCIENCE
- Top-down laminar organization of the excitatory network in motor cortex
- (2008) Nicholas Weiler et al. NATURE NEUROSCIENCE
- Computer modelling of epilepsy
- (2008) William W. Lytton NATURE REVIEWS NEUROSCIENCE
- Brian: a simulator for spiking neural networks in Python
- (2008) Dan Goodman Frontiers in Neuroinformatics
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation