Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism

The fungal ribonuclease-like effector protein CSEP0064/BEC1054 represses plant immunity and interferes with degradation of host ribosomal RNA

(2019) Helen G. Pennington et al.   PLoS Pathogens

Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

(2018) Lamprinos Frantzeskakis et al.   BMC GENOMICS

Subfamily-Specific Specialization of RGH1/MLA Immune Receptors in Wild Barley

(2018) Takaki Maekawa et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A chromosome-scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew

(2018) Marion C. Müller et al.   NEW PHYTOLOGIST

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Loss ofAvrSr50by somatic exchange in stem rust leads to virulence forSr50resistance in wheat

(2017) Jiapeng Chen et al.   SCIENCE

Evolutionary Convergence and Divergence in NLR Function and Structure

(2017) Etienne Meunier et al.   TRENDS IN IMMUNOLOGY

Purification of High Molecular Weight Genomic DNA from Powdery Mildew for Long-Read Sequencing

(2017) Joanna M. Feehan et al.   Jove-Journal of Visualized Experiments

Supramolecular Control over Split-Luciferase Complementation

(2016) Ralph P. G. Bosmans et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species

(2016) Fabrizio Menardo et al.   NATURE GENETICS

Integration of decoy domains derived from protein targets of pathogen effectors into plant immune receptors is widespread

(2016) Thomas Kroj et al.   NEW PHYTOLOGIST

AvrPm2 encodes an RNase-like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus

(2016) Coraline R. Praz et al.   NEW PHYTOLOGIST

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Allelic barley MLA immune receptors recognize sequence-unrelated avirulence effectors of the powdery mildew pathogen

(2016) Xunli Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intracellular innate immune surveillance devices in plants and animals

(2016) J. D. G. Jones et al.   SCIENCE

Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon

(2015) Joelle Amselem et al.   BMC GENOMICS

The N-Terminal Domain of the Tomato Immune Protein Prf Contains Multiple Homotypic and Pto Kinase Interaction Sites

(2015) Isabel Marie-Luise Saur et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences: Figure 1.

(2015) Liam J. McGuffin et al.   NUCLEIC ACIDS RESEARCH

Multiple Avirulence Loci and Allele-Specific Effector Recognition Control thePm3Race-Specific Resistance of Wheat to Powdery Mildew

(2015) Salim Bourras et al.   PLANT CELL

Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi

(2015) Karine de Guillen et al.   PLoS Pathogens

Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor

(2015) A Maqbool et al.   eLife

The wheat Sr50 gene reveals rich diversity at a cereal disease resistance locus

(2015) Rohit Mago et al.   Nature Plants

Pathogenic divergence of Central European and Australian populations ofBlumeria graminisf. sp.hordei

(2014) A. Dreiseitl   ANNALS OF APPLIED BIOLOGY

Filamentous pathogen effector functions: of pathogens, hosts and microbiomes

(2014) Hanna Rovenich et al.   CURRENT OPINION IN PLANT BIOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Microbial genome-enabled insights into plant–microorganism interactions

(2014) David S. Guttman et al.   NATURE REVIEWS GENETICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

A novel conserved mechanism for plant NLR protein pairs: the “integrated decoy” hypothesis

(2014) Stella Cesari et al.   Frontiers in Plant Science

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph

(2013) Thomas Wicker et al.   NATURE GENETICS

The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding

(2013) S. Cesari et al.   PLANT CELL

Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

(2013) S. Hacquard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Gene Sr33, an Ortholog of Barley Mla Genes, Encodes Resistance to Wheat Stem Rust Race Ug99

(2013) S. Periyannan et al.   SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Web Apollo: a web-based genomic annotation editing platform

(2013) Eduardo Lee et al.   GENOME BIOLOGY

Evolution and Conservation of Plant NLR Functions

(2013) Florence Jacob et al.   Frontiers in Immunology

Structure and evolution of barley powdery mildew effector candidates

(2012) Carsten Pedersen et al.   BMC GENOMICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Arms race co-evolution ofMagnaporthe oryzae AVR-Pikand ricePikgenes driven by their physical interactions

(2012) Hiroyuki Kanzaki et al.   PLANT JOURNAL

Conservation of NLR-triggered immunity across plant lineages

(2012) T. Maekawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using Drosophila melanogaster as a Model for Genotoxic Chemical Mutational Studies with a New Program, SnpSift

(2012) Pablo Cingolani et al.   Frontiers in Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Coiled-Coil Domain-Dependent Homodimerization of Intracellular Barley Immune Receptors Defines a Minimal Functional Module for Triggering Cell Death

(2011) Takaki Maekawa et al.   Cell Host & Microbe

NLR functions in plant and animal immune systems: so far and yet so close

(2011) Takaki Maekawa et al.   NATURE IMMUNOLOGY

Quantitative analysis of dynamic protein-protein interactions in planta by a floated-leaf luciferase complementation imaging (FLuCI) assay using binary Gateway vectors

(2011) Christian Gehl et al.   PLANT JOURNAL

An improved method for whole protein extraction from yeast Saccharomyces cerevisiae

(2011) Tingting Zhang et al.   YEAST

Wheat gene bank accessions as a source of new alleles of the powdery mildew resistance gene Pm3: a large scale allele mining project

(2010) Navreet K Bhullar et al.   BMC PLANT BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Defining the Origins of the NOD-Like Receptor System at the Base of Animal Evolution

(2010) C. Lange et al.   MOLECULAR BIOLOGY AND EVOLUTION

Co-evolutionary interactions between host resistance and pathogen effector genes in flax rust disease

(2010) MICHAEL RAVENSDALE et al.   MOLECULAR PLANT PATHOLOGY

Diversity at theMlaPowdery Mildew Resistance Locus from Cultivated Barley Reveals Sites of Positive Selection

(2010) Sabine Seeholzer et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

Balanced Nuclear and Cytoplasmic Activities of EDS1 Are Required for a Complete Plant Innate Immune Response

(2010) Ana V. García et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The Powdery Mildews: A Review of the World's Most Familiar (Yet Poorly Known) Plant Pathogens

(2008) Dean A. Glawe   Annual Review of Phytopathology

Genetics of avirulence genes in Blumeria graminis f.sp. hordei and physical mapping of AVRa22 and AVRa12

(2007) Pari Skamnioti et al.   FUNGAL GENETICS AND BIOLOGY