Genomic signatures of adaptation to Sahelian and Soudanian climates in sorghum landraces of Senegal

Population structure of the NPGS Senegalese sorghum collection and its evaluation to identify new disease resistant genes

(2018) Hugo E. Cuevas et al.   PLoS One

Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population

(2017) Sophie Bouchet et al.   GENETICS

Unexpected pattern of pearl millet genetic diversity among ethno-linguistic groups in the Lake Chad Basin

(2017) A K Naino Jika et al.   HEREDITY

Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits

(2017) Lei Fang et al.   NATURE GENETICS

Signatures of adaptation in the weedy rice genome

(2017) Lin-Feng Li et al.   NATURE GENETICS

A study of allelic diversity underlying flowering-time adaptation in maize landraces

(2017) J Alberto Romero Navarro et al.   NATURE GENETICS

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

(2017) Ryan F. McCormick et al.   PLANT JOURNAL

Precipitation drives global variation in natural selection

(2017) Adam M. Siepielski et al.   SCIENCE

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America

(2017) Kelly Swarts et al.   SCIENCE

Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population

(2017) Sophie Bouchet et al.   GENETICS

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Maize diversity associated with social origin and environmental variation in Southern Mexico

(2016) Q Orozco-Ramírez et al.   HEREDITY

Impacts of drought and responses of rural populations in West Africa: a systematic review

(2016) Denis Gautier et al.   Wiley Interdisciplinary Reviews-Climate Change

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

TESS3: fast inference of spatial population structure and genome scans for selection

(2015) Kevin Caye et al.   Molecular Ecology Resources

Circadian Clock Genes Universally Control Key Agricultural Traits

(2015) Claire Bendix et al.   Molecular Plant

Molecular Evolution of the Sorghum Maturity Gene Ma3

(2015) Yan Wang et al.   PLoS One

Seed exchange networks, ethnicity, and sorghum diversity

(2015) Vanesse Labeyrie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-environment associations in sorghum landraces predict adaptive traits

(2015) J. R. Lasky et al.   Science Advances

Genomics for drought resistance – getting down to earth

(2014) Abraham Blum   FUNCTIONAL PLANT BIOLOGY

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Stay-green alleles individually enhance grain yield in sorghum under drought by modifying canopy development and water uptake patterns

(2014) Andrew K. Borrell et al.   NEW PHYTOLOGIST

Photoperiod sensitivity of local millet and sorghum varieties in West Africa

(2014) M. Sanon et al.   NJAS-WAGENINGEN JOURNAL OF LIFE SCIENCES

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Ethnolinguistic structuring of sorghum genetic diversity in Africa and the role of local seed systems

(2014) Ola T. Westengen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct and indirect selection on flowering time, water-use efficiency (WUE,δ13C), and WUE plasticity to drought inArabidopsis thaliana

(2014) Amanda M. Kenney et al.   Ecology and Evolution

Detecting Natural Selection in Genomic Data

(2013) Joseph J. Vitti et al.   Annual Review of Genetics

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Naturally occurring allele diversity allows potato cultivation in northern latitudes

(2013) Bjorn Kloosterman et al.   NATURE

Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum

(2013) Emma S. Mace et al.   Nature Communications

Genetic Structure and Linkage Disequilibrium in a Diverse, Representative Collection of the C4 Model Plant, Sorghum bicolor

(2013) Yi-Hong Wang et al.   G3-Genes Genomes Genetics

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Association analysis of photoperiodic flowering time genes in West and Central African sorghum [Sorghum bicolor (L.) Moench]

(2012) Sankalp U Bhosale et al.   BMC PLANT BIOLOGY

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

Genetic Structure, Linkage Disequilibrium and Signature of Selection in Sorghum: Lessons from Physically Anchored DArT Markers

(2012) Sophie Bouchet et al.   PLoS One

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

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(2011) P. Danecek et al.   BIOINFORMATICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Selection for Earlier Flowering Crop Associated with Climatic Variations in the Sahel

(2011) Yves Vigouroux et al.   PLoS One

Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum

(2011) R. L. Murphy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Genetic diversity, structure, gene flow and evolutionary relationships within the Sorghum bicolor wild–weedy–crop complex in a western African region

(2011) Fabrice Sagnard et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Spatially explicit Bayesian clustering models in population genetics

(2010) OLIVIER FRANÇOIS et al.   Molecular Ecology Resources

Working toward a synthesis of archaeological, linguistic, and genetic data for inferring African population history

(2010) L. B. Scheinfeldt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Genetic Properties of the Maize Nested Association Mapping Population

(2009) M. D. McMullen et al.   SCIENCE

From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants

(2008) Colin Cavanagh et al.   CURRENT OPINION IN PLANT BIOLOGY

The history of environmental change and adaptation in eastern Saloum–Senegal—Driving forces and perceptions

(2008) Cheikh Mbow et al.   GLOBAL AND PLANETARY CHANGE

High outcrossing rates in fields with mixed sorghum landraces: how are landraces maintained?

(2008) A Barnaud et al.   HEREDITY

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

(2008) Montgomery Slatkin   NATURE REVIEWS GENETICS