Dynamics of Bacterial and Viral Communities in Paddy Soil with Irrigation and Urea Application

Viral and bacterial community responses to stimulated Fe(III)‐bioreduction during simulated subsurface bioremediation

(2019) Xiaolong Liang et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term effect of pH on denitrification: High pH benefits achieving partial-denitrification

(2019) Wenting Qian et al.   BIORESOURCE TECHNOLOGY

Effects of urease and nitrification inhibitors on nitrous oxide emissions and nitrifying/denitrifying microbial communities in a rainfed maize soil: A 6-year field observation

(2018) Dan Dong et al.   SOIL & TILLAGE RESEARCH

The ‘Neglected’ Soil Virome – Potential Role and Impact

(2018) Akbar Adjie Pratama et al.   TRENDS IN MICROBIOLOGY

Exploring Viral Diversity in a Unique South African Soil Habitat

(2018) Jane Segobola et al.   Scientific Reports

Host-linked soil viral ecology along a permafrost thaw gradient

(2018) Joanne B. Emerson et al.   Nature Microbiology

Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes

(2018) Mamoru Oshiki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Viruses in soil: Nano-scale undead drivers of microbial life, biogeochemical turnover and ecosystem functions

(2018) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

(2018) Gareth Trubl et al.   mSystems

Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory

(2017) Kurt E. Williamson et al.   Annual Review of Virology

Environmental drivers of viral community composition in Antarctic soils identified by viromics

(2017) Evelien M. Adriaenssens et al.   Microbiome

Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems

(2017) Joanne B. Emerson et al.   Microbiome

Lytic to temperate switching of viral communities

(2016) B. Knowles et al.   NATURE

Nitrogen fertilization directly affects soil bacterial diversity and indirectly affects bacterial community composition

(2016) Jun Zeng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Viruses as Winners in the Game of Life

(2016) Ana Georgina Cobián Güemes et al.   Annual Review of Virology

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Diversity and Ecology of Viruses in Hyperarid Desert Soils

(2015) Olivier Zablocki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phage-bacteria interaction network in human oral microbiome

(2015) Jinfeng Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Level Diversity of Tailed Phages, Eukaryote-Associated Viruses, and Virophage-Like Elements in the Metaviromes of Antarctic Soils

(2014) Olivier Zablocki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community analysis in rice paddy soils irrigated by acid mine drainage contaminated water

(2014) Min Sun et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effect of different long-term fertilization regimes on the viral community in an agricultural soil of Southern China

(2014) Lin Chen et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

The elemental composition of virus particles: implications for marine biogeochemical cycles

(2014) Luis F. Jover et al.   NATURE REVIEWS MICROBIOLOGY

Direct Assessment of Viral Diversity in Soils by Random PCR Amplification of Polymorphic DNA

(2013) Sharath Srinivasiah et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking the lytic and lysogenic bacteriophage cycles to environmental conditions, host physiology and their variability in coastal lagoons

(2013) C. F. Maurice et al.   ENVIRONMENTAL MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Coevolutionary diversification creates nested-modular structure in phage-bacteria interaction networks

(2013) S. J. Beckett et al.   Interface Focus

The Genetics of Symbiotic Nitrogen Fixation: Comparative Genomics of 14 Rhizobia Strains by Resolution of Protein Clusters

(2012) Michael Black et al.   Genes

Lutibaculum baratangense gen. nov., sp. nov., a proteobacterium isolated from a mud volcano

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Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems

(2010) Kelly S. Ramirez et al.   ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ecology of viruses in soils: Past, present and future perspectives

(2010) Makoto Kimura et al.   SOIL SCIENCE AND PLANT NUTRITION

Viruses in soils: morphological diversity and abundance in the rhizosphere

(2009) M.M. Swanson et al.   ANNALS OF APPLIED BIOLOGY

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(2009) Forest Rohwer et al.   ENVIRONMENTAL MICROBIOLOGY