Improved topology prediction using the terminal hydrophobic helices rule

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

(2015) Konstantinos D. Tsirigos et al.   NUCLEIC ACIDS RESEARCH

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

(2014) B. E. Suzek et al.   BIOINFORMATICS

The Positive Inside Rule Is Stronger When Followed by a Transmembrane Helix

(2014) Minttu T. Virkki et al.   JOURNAL OF MOLECULAR BIOLOGY

Expediting topology data gathering for the TOPDB database

(2014) László Dobson et al.   NUCLEIC ACIDS RESEARCH

Activities at the Universal Protein Resource (UniProt)

(2013)   NUCLEIC ACIDS RESEARCH

PDBTM: Protein Data Bank of transmembrane proteins after 8 years

(2012) Dániel Kozma et al.   NUCLEIC ACIDS RESEARCH

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

(2012) Sameer Velankar et al.   NUCLEIC ACIDS RESEARCH

A guideline to proteome-wide α-helical membrane protein topology predictions

(2012) Konstantinos D. Tsirigos et al.   PROTEOMICS

Rapid membrane protein topology prediction

(2011) Aron Hennerdal et al.   BIOINFORMATICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Repositioning of Transmembrane α-Helices during Membrane Protein Folding

(2010) Anni Kauko et al.   JOURNAL OF MOLECULAR BIOLOGY

Control of Membrane Protein Topology by a Single C-Terminal Residue

(2010) S. Seppala et al.   SCIENCE

Transmembrane protein topology prediction using support vector machines

(2009) Timothy Nugent et al.   BMC BIOINFORMATICS

Membrane Insertion of Marginally Hydrophobic Transmembrane Helices Depends on Sequence Context

(2009) Linnea E. Hedin et al.   JOURNAL OF MOLECULAR BIOLOGY

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

(2008) Håkan Viklund et al.   BIOINFORMATICS

SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology

(2008) Håkan Viklund et al.   BIOINFORMATICS

Prediction of membrane-protein topology from first principles

(2008) A. Bernsel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks

(2008) Sheila M. Reynolds et al.   PLoS Computational Biology