MyDGR: a server for identification and characterization of diversity-generating retroelements

Crystal structure of a Thermus aquaticus diversity-generating retroelement variable protein

(2019) Sumit Handa et al.   PLoS One

Template-assisted synthesis of adenine-mutagenized cDNA by a retroelement protein complex

(2018) Sumit Handa et al.   NUCLEIC ACIDS RESEARCH

Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes

(2018) Jeffrey K. Cornuault et al.   Microbiome

Bacterial group II introns generate genetic diversity by circularization and trans-splicing from a population of intron-invaded mRNAs

(2018) Félix LaRoche-Johnston et al.   PLoS Genetics

A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage

(2018) Sean Benler et al.   Microbiome

Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey

(2017) Li Wu et al.   NUCLEIC ACIDS RESEARCH

Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea

(2017) Blair G. Paul et al.   Nature Microbiology

Targeted diversity generation by intraterrestrial archaea and archaeal viruses

(2015) Blair G. Paul et al.   Nature Communications

Identification of Diversity-Generating Retroelements in Human Microbiomes

(2014) Yuzhen Ye   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comprehensive Phylogenetic Analysis of Bacterial Reverse Transcriptases

(2014) Nicolás Toro et al.   PLoS One

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Rapid evolution of the human gut virome

(2013) S. Minot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Surface display of a massively variable lipoprotein by a Legionella diversity-generating retroelement

(2013) D. Arambula et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of a comprehensive dataset of diversity generating retroelements generated by the program DiGReF

(2012) Thomas Schillinger et al.   BMC GENOMICS

A framework for human microbiome research

(2012)   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Self-made phage libraries with heterologous inserts in the Mtd of Bordetella bronchiseptica

(2012) C. M. Overstreet et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Structure of the Essential Diversity-Generating Retroelement Protein bAvd and Its Functionally Important Interaction with Reverse Transcriptase

(2012) Maher Alayyoubi et al.   STRUCTURE

Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages

(2011) David Bikard et al.   CURRENT OPINION IN IMMUNOLOGY

Conservation of the C-type lectin fold for massive sequence variation in a Treponema diversity-generating retroelement

(2011) J. Le Coq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Target Site Recognition by a Diversity-Generating Retroelement

(2011) Huatao Guo et al.   PLoS Genetics

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Three-dimensional structure of tropism-switching Bordetella bacteriophage

(2010) W. Dai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS