Six alternative proteases for mass spectrometry–based proteomics beyond trypsin

Proteomics beyond trypsin

(2015) Liana Tsiatsiani et al.   FEBS Journal

One-hour proteome analysis in yeast

(2015) Alicia L Richards et al.   Nature Protocols

An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas

(2015) Piero Giansanti et al.   Cell Reports

Adenovirus Composition, Proteolysis, and Disassembly Studied by In-depth Qualitative and Quantitative Proteomics

(2014) Marco Benevento et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Expanding Proteome Coverage with Orthogonal-specificity α-Lytic Proteases

(2014) Jesse G. Meyer et al.   MOLECULAR & CELLULAR PROTEOMICS

Confetti: A Multiprotease Map of theHeLaProteome for Comprehensive Proteomics

(2014) Xiaofeng Guo et al.   MOLECULAR & CELLULAR PROTEOMICS

Space–time wiring specificity supports direction selectivity in the retina

(2014) Jinseop S. Kim et al.   NATURE

Mass-spectrometry-based draft of the human proteome

(2014) Mathias Wilhelm et al.   NATURE

LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification

(2014) Pitter F Huesgen et al.   NATURE METHODS

Universal sample preparation method integrating trichloroacetic acid/acetone precipitation with phenol extraction for crop proteomic analysis

(2014) Xiaolin Wu et al.   Nature Protocols

Cleaved and Missed Sites for Trypsin, Lys-C, and Lys-N Can Be Predicted with High Confidence on the Basis of Sequence Context

(2013) Paul D. Gershon   JOURNAL OF PROTEOME RESEARCH

Large-scale identification of ubiquitination sites by mass spectrometry

(2013) Namrata D Udeshi et al.   Nature Protocols

Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis

(2013) Teck Yew Low et al.   Cell Reports

Mass Spectrometry–Based Proteomics and Network Biology

(2012) Ariel Bensimon et al.   Annual Review of Biochemistry

Improve the Coverage for the Analysis of Phosphoproteome of HeLa Cells by a Tandem Digestion Approach

(2012) Yangyang Bian et al.   JOURNAL OF PROTEOME RESEARCH

Protease bias in absolute protein quantitation

(2012) Mao Peng et al.   NATURE METHODS

Analysis of protein mixtures from whole-cell extracts by single-run nanoLC-MS/MS using ultralong gradients

(2012) Thomas Köcher et al.   Nature Protocols

Next-generation proteomics: towards an integrative view of proteome dynamics

(2012) A. F. Maarten Altelaar et al.   NATURE REVIEWS GENETICS

Quality control in LC-MS/MS

(2011) Thomas Köcher et al.   PROTEOMICS

Mass spectrometry–based proteomics in cell biology

(2010) Tobias C. Walther et al.   JOURNAL OF CELL BIOLOGY

Evaluation of Metalloendopeptidase Lys-N Protease Performance under Different Sample Handling Conditions

(2010) Nadia Taouatas et al.   JOURNAL OF PROTEOME RESEARCH

Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics

(2010) Danielle L. Swaney et al.   JOURNAL OF PROTEOME RESEARCH

Proteome-wide protein concentrations in the human heart

(2010) Thin Thin Aye et al.   Molecular BioSystems

Lys-N and Trypsin Cover Complementary Parts of the Phosphoproteome in a Refined SCX-Based Approach

(2009) Sharon Gauci et al.   ANALYTICAL CHEMISTRY

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

(2009) John R. Yates et al.   Annual Review of Biomedical Engineering

Proteomic Analyses UsingGrifola frondosaMetalloendoprotease Lys-N

(2009) Laura Hohmann et al.   JOURNAL OF PROTEOME RESEARCH

Improved visualization of protein consensus sequences by iceLogo

(2009) Niklaas Colaert et al.   NATURE METHODS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Interferences and contaminants encountered in modern mass spectrometry

(2008) Bernd O. Keller et al.   ANALYTICA CHIMICA ACTA

Multiplexed Proteomics Mapping of Yeast RNA Polymerase II and III Allows Near-Complete Sequence Coverage and Reveals Several Novel Phosphorylation Sites

(2008) Shabaz Mohammed et al.   ANALYTICAL CHEMISTRY

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

(2008) Lyris M. F. de Godoy et al.   NATURE

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

(2008) Judit Villén et al.   Nature Protocols