Autonomous dynamic control of DNA nanostructure self-assembly

T7 RNA polymerase non-specifically transcribes and induces disassembly of DNA nanostructures

(2018) Samuel W Schaffter et al.   NUCLEIC ACIDS RESEARCH

pH-Driven Reversible Self-Assembly of Micron-Scale DNA Scaffolds

(2017) Leopold N. Green et al.   NANO LETTERS

A coarse-grained model captures the temporal evolution of DNA nanotube length distributions

(2017) Vahid Mardanlou et al.   Natural Computing

Enzyme-free nucleic acid dynamical systems

(2017) Niranjan Srinivas et al.   SCIENCE

A coarse-grained model captures the temporal evolution of DNA nanotube length distributions

(2017) Vahid Mardanlou et al.   Natural Computing

Engineering Circular Gliding of Actin Filaments Along Myosin-Patterned DNA Nanotube Rings To Study Long-Term Actin–Myosin Behaviors

(2016) Rizal F. Hariadi et al.   ACS Nano

The CDK-APC/C Oscillator Predominantly Entrains Periodic Cell-Cycle Transcription

(2016) Sahand Jamal Rahi et al.   CELL

pH-Controlled Assembly of DNA Tiles

(2016) Alessia Amodio et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Molecular Titration Promotes Oscillations and Bistability in Minimal Network Models with Monomeric Regulators

(2016) Christian Cuba Samaniego et al.   ACS Synthetic Biology

DNA rendering of polyhedral meshes at the nanoscale

(2015) Erik Benson et al.   NATURE

Anisotropic nanoparticle complementarity in DNA-mediated co-crystallization

(2015) Matthew N. O’Brien et al.   NATURE MATERIALS

Complex wireframe DNA origami nanostructures with multi-arm junction vertices

(2015) Fei Zhang et al.   Nature Nanotechnology

Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics

(2015) Rizal F. Hariadi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components

(2015) T. Gerling et al.   SCIENCE

Programmable materials and the nature of the DNA bond

(2015) M. R. Jones et al.   SCIENCE

Thermodynamics and kinetics of DNA nanotube polymerization from single-filament measurements

(2015) Rizal F. Hariadi et al.   Chemical Science

Aptamer Selection Technology and Recent Advances

(2015) Michael Blind et al.   Molecular Therapy-Nucleic Acids

Structural DNA Nanotechnology: State of the Art and Future Perspective

(2014) Fei Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A load driver device for engineering modularity in biological networks

(2014) Deepak Mishra et al.   NATURE BIOTECHNOLOGY

Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator

(2014) Maximilian Weitz et al.   Nature Chemistry

Directing Self-Assembly of DNA Nanotubes Using Programmable Seeds

(2013) Abdul M. Mohammed et al.   NANO LETTERS

An excitable signal integrator couples to an idling cytoskeletal oscillator to drive cell migration

(2013) Chuan-Hsiang Huang et al.   NATURE CELL BIOLOGY

Programmable chemical controllers made from DNA

(2013) Yuan-Jyue Chen et al.   Nature Nanotechnology

Integrating DNA strand-displacement circuitry with DNA tile self-assembly

(2013) David Yu Zhang et al.   Nature Communications

Direct Atomic Force Microscopy Observation of DNA Tile Crystal Growth at the Single-Molecule Level

(2012) Constantine G. Evans et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Synthetic homeostatic materials with chemo-mechano-chemical self-regulation

(2012) Ximin He et al.   NATURE

Competition for Catalytic Resources Alters Biological Network Dynamics

(2012) Yannick Rondelez   PHYSICAL REVIEW LETTERS

Bottom-up construction of in vitro switchable memories

(2012) A. Padirac et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Specific and reversible DNA-directed self-assembly of oil-in-water emulsion droplets

(2012) M. Hadorn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three-Dimensional Structures Self-Assembled from DNA Bricks

(2012) Y. Ke et al.   SCIENCE

Using Azobenzene Incorporated DNA Aptamers to Probe Molecular Binding Interactions

(2011) Joseph A. Phillips et al.   BIOCONJUGATE CHEMISTRY

Cell-free protein synthesis: Applications come of age

(2011) Erik D. Carlson et al.   BIOTECHNOLOGY ADVANCES

A simple DNA gate motif for synthesizing large-scale circuits

(2011) L. Qian et al.   Journal of the Royal Society Interface

Synthetic in vitro transcriptional oscillators

(2011) J. Kim et al.   Molecular Systems Biology

Programming an in vitro DNA oscillator using a molecular networking strategy

(2011) K. Montagne et al.   Molecular Systems Biology

Organizing DNA Origami Tiles into Larger Structures Using Preformed Scaffold Frames

(2011) Zhao Zhao et al.   NANO LETTERS

Programmable molecular recognition based on the geometry of DNA nanostructures

(2011) Sungwook Woo et al.   Nature Chemistry

Dynamic DNA nanotechnology using strand-displacement reactions

(2011) David Yu Zhang et al.   Nature Chemistry

Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods

(2011) Bingling Li et al.   NUCLEIC ACIDS RESEARCH

Timing molecular motion and production with a synthetic transcriptional clock

(2011) E. Franco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Organization of Intracellular Reactions with Rationally Designed RNA Assemblies

(2011) C. J. Delebecque et al.   SCIENCE

Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades

(2011) L. Qian et al.   SCIENCE

Applications of Aptamers as Sensors

(2010) Eun Jeong Cho et al.   Annual Review of Analytical Chemistry

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Robustness and modularity properties of a non-covalent DNA catalytic reaction

(2010) D. Y. Zhang et al.   NUCLEIC ACIDS RESEARCH

DNA as a universal substrate for chemical kinetics

(2010) D. Soloveichik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal

(2009) Jianping Zheng et al.   NATURE

Microtubule assembly, organization and dynamics in axons and dendrites

(2009) Cecilia Conde et al.   NATURE REVIEWS NEUROSCIENCE

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH

Control of Self-Assembly of DNA Tubules Through Integration of Gold Nanoparticles

(2009) J. Sharma et al.   SCIENCE

Life as a Nanoscale Phenomenon

(2008) Stephen Mann   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Modular cell biology: retroactivity and insulation

(2008) Domitilla Del Vecchio et al.   Molecular Systems Biology

Filopodia: molecular architecture and cellular functions

(2008) Pieta K. Mattila et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Beyond polymer polarity: how the cytoskeleton builds a polarized cell

(2008) Rong Li et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY