Combining RNA and Protein Profiling Data with Network Interactions Identifies Genes Associated with Spermatogenesis in Mouse and Human1

Tumor suppressor p53 and its mutants in cancer metabolism

(2015) Juan Liu et al.   CANCER LETTERS

Development and Applications of CRISPR-Cas9 for Genome Engineering

(2014) Patrick D. Hsu et al.   CELL

The mammalian Doublesex homolog DMRT6 coordinates the transition between mitotic and meiotic developmental programs during spermatogenesis

(2014) T. Zhang et al.   DEVELOPMENT

The human testis-specific proteome defined by transcriptomics and antibody-based profiling

(2014) D. Djureinovic et al.   MOLECULAR HUMAN REPRODUCTION

A draft map of the human proteome

(2014) Min-Sik Kim et al.   NATURE

A guide to genome engineering with programmable nucleases

(2014) Hyongbum Kim et al.   NATURE REVIEWS GENETICS

STK31/TDRD8, a Germ Cell-Specific Factor, Is Dispensable for Reproduction in Mice

(2014) Jian Zhou et al.   PLoS One

Epigenetic Regulation of Sox30 Is Associated with Testis Development in Mice

(2014) Fei Han et al.   PLoS One

Ten years of next-generation sequencing technology

(2014) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Suppression of genetic recombination in the pseudoautosomal region and at subtelomeres in mice with a hypomorphic Spo11 allele

(2013) Fatima Smagulova et al.   BMC GENOMICS

Genome-wide Generation and Systematic Phenotyping of Knockout Mice Reveals New Roles for Many Genes

(2013) Jacqueline K. White et al.   CELL

The combined human sperm proteome: cellular pathways and implications for basic and clinical science

(2013) Alexandra Amaral et al.   HUMAN REPRODUCTION UPDATE

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

Fox tales: Regulation of gonadotropin gene expression by forkhead transcription factors

(2013) Varykina G. Thackray   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Stk31is dispensable for embryonic development and spermatogenesis in mice

(2013) Jianqiang Bao et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse

(2013) Judith A. Blake et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2013)   NUCLEIC ACIDS RESEARCH

The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data

(2013) Gautier Koscielny et al.   NUCLEIC ACIDS RESEARCH

Saccharomycesgenome database provides new regulation data

(2013) Maria C. Costanzo et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Gene Expression Regulation by Upstream Open Reading Frames and Human Disease

(2013) Cristina Barbosa et al.   PLoS Genetics

MEIOB Targets Single-Strand DNA and Is Necessary for Meiotic Recombination

(2013) Benoit Souquet et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Binding Interaction of HMGB4 with Cisplatin-Modified DNA

(2012) Semi Park et al.   BIOCHEMISTRY

Multiple modes of chromatin remodeling by Forkhead box proteins

(2012) Avin S. Lalmansingh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Cancer genetics and genomics of human FOX family genes

(2012) Masuko Katoh et al.   CANCER LETTERS

Arrested spermatogenesis and evidence for DNA damage in PTIP mutant testes

(2012) Kristopher R. Schwab et al.   DEVELOPMENTAL BIOLOGY

Mouse genetic and phenotypic resources for human genetics

(2012) Paul N. Schofield et al.   HUMAN MUTATION

Global human tissue profiling and protein network analysis reveals distinct levels of transcriptional germline-specificity and identifies target genes for male infertility

(2012) Frédéric Chalmel et al.   HUMAN REPRODUCTION

Identification of Potential Regulatory Elements in the 5' and 3' UTRs of 12 Translationally Regulated mRNAs in Mammalian Spermatids by Comparative Genomics

(2012) T. A. Chowdhury et al.   JOURNAL OF ANDROLOGY

Analyzing Protein–Protein Interaction Networks

(2012) Gavin C. K. W. Koh et al.   JOURNAL OF PROTEOME RESEARCH

In-depth proteomic analysis of the human sperm reveals complex protein compositions

(2012) Gaigai Wang et al.   Journal of Proteomics

The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotyping

(2012) Steve D. M. Brown et al.   MAMMALIAN GENOME

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

ChIP–seq and beyond: new and improved methodologies to detect and characterize protein–DNA interactions

(2012) Terrence S. Furey   NATURE REVIEWS GENETICS

The high mobility group box: the ultimate utility player of a cell

(2012) Christopher S. Malarkey et al.   TRENDS IN BIOCHEMICAL SCIENCES

Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology

(2011) Jürgen Cox et al.   Annual Review of Biochemistry

Interactome Networks and Human Disease

(2011) Marc Vidal et al.   CELL

APP physiological and pathophysiological functions: insights from animal models

(2011) Qinxi Guo et al.   CELL RESEARCH

Regulation of female reproduction by p53 and its family members

(2011) Zhaohui Feng et al.   FASEB JOURNAL

Foxo1 is required in mouse spermatogonial stem cells for their maintenance and the initiation of spermatogenesis

(2011) Meredith J. Goertz et al.   JOURNAL OF CLINICAL INVESTIGATION

A conditional knockout resource for the genome-wide study of mouse gene function

(2011) William C. Skarnes et al.   NATURE

Enhancer function: new insights into the regulation of tissue-specific gene expression

(2011) Chin-Tong Ong et al.   NATURE REVIEWS GENETICS

neXtProt: a knowledge platform for human proteins

(2011) L. Lane et al.   NUCLEIC ACIDS RESEARCH

Forkhead transcription factors in ovarian function

(2011) Nina Henriette Uhlenhaut et al.   REPRODUCTION

Genomic Instability, Defective Spermatogenesis, Immunodeficiency, and Cancer in a Mouse Model of the RIDDLE Syndrome

(2011) Toshiyuki Bohgaki et al.   PLoS Genetics

Mouse models in male fertility research

(2010) Duangporn Jamsai et al.   ASIAN JOURNAL OF ANDROLOGY

HMGB proteins: Interactions with DNA and chromatin

(2010) Michal Štros   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Systems biology of mammalian cell division

(2010) Ralf Kittler et al.   CELL CYCLE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Grasping trimethylation of histone H3 at lysine 4

(2010) Michiel Vermeulen et al.   Epigenomics

Molecular characterization and gene disruption of a novel zinc-finger protein, HIT-4, expressed in rodent brain

(2009) Yasutaka Tanabe et al.   JOURNAL OF NEUROCHEMISTRY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

HMGB4, a Novel Member of the HMGB Family, Is Preferentially Expressed in the Mouse Testis and Localizes to the Basal Pole of Elongating Spermatids1

(2008) Raffaella Catena et al.   BIOLOGY OF REPRODUCTION

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology

(2008) Frédéric Chalmel et al.   BMC BIOINFORMATICS

Meiotic failure in male mice lacking an X-linked factor

(2008) F. Yang et al.   GENES & DEVELOPMENT

The biology of infertility: research advances and clinical challenges

(2008) Martin M Matzuk et al.   NATURE MEDICINE

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

ZIP4H (TEX11) Deficiency in the Mouse Impairs Meiotic Double Strand Break Repair and the Regulation of Crossing Over

(2008) Carrie A. Adelman et al.   PLoS Genetics