Detection of respiratory pathogens in clinical samples using metagenomic shotgun sequencing

Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing

(2018) Morgan I. Ivy et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Tropheryma whipplei DNA in bronchoalveolar lavage samples: a case control study

(2016) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Cohort Study of Airway Mycobiome in Adult Cystic Fibrosis Patients: Differences in Community Structure between Fungi and Bacteria Reveal Predominance of Transient Fungal Elements

(2015) Rolf Kramer et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Metagenomic analysis for detecting pathogens in culture-negative infective endocarditis

(2015) Yuto Fukui et al.   JOURNAL OF INFECTION AND CHEMOTHERAPY

Deconstructing the Polymerase Chain Reaction: Understanding and Correcting Bias Associated with Primer Degeneracies and Primer-Template Mismatches

(2015) Stefan J. Green et al.   PLoS One

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

(2014) Rachel Poretsky et al.   PLoS One

Pseudomonas aeruginosaVentilator-associated Pneumonia. Predictive Factors of Treatment Failure

(2013) Benjamin Planquette et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples

(2013) H. Hasman et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Can an etiologic agent be identified in adults who are hospitalized for community-acquired pneumonia: Results of a one-year study

(2013) Daniel M. Musher et al.   JOURNAL OF INFECTION

Asthma-associated differences in microbial composition of induced sputum

(2012) Pradeep Reddy Marri et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Microbiome Diversity in the Bronchial Tracts of Patients with Chronic Obstructive Pulmonary Disease

(2012) R. Cabrera-Rubio et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The core gut microbiome, energy balance and obesity

(2009) Peter J. Turnbaugh et al.   JOURNAL OF PHYSIOLOGY-LONDON