Recent advances in small RNA mediated plant-virus interactions

Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

(2018) Jinyan Wang et al.   BMC PLANT BIOLOGY

Genome wide identification of cotton ( Gossypium hirsutum )-encoded microRNA targets against Cotton leaf curl Burewala virus

(2018) Shweta et al.   GENE

Identification of miRNAs and their targets in maize in response to Sugarcane mosaic virus infection

(2018) Zihao Xia et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Octapartite negative-sense RNA genome of High Plains wheat mosaic virus encodes two suppressors of RNA silencing

(2018) Adarsh K. Gupta et al.   VIROLOGY

Resistance to CymMV and ORSV in artificial microRNA transgenic Nicotiana benthamiana plants

(2018) Udomporn Petchthai et al.   Scientific Reports

A role for small RNA in regulating innate immunity during plant growth

(2018) Yingtian Deng et al.   PLoS Pathogens

Cell Death Is Not Sufficient for the Restriction of Potato Virus Y Spread in Hypersensitive Response-Conferred Resistance in Potato

(2018) Tjaša Lukan et al.   Frontiers in Plant Science

Altered accumulation of osa-miR171b contributes to rice stripe virus infection by regulating disease symptoms

(2017) Aizi Tong et al.   JOURNAL OF EXPERIMENTAL BOTANY

A viral suppressor of RNA silencing inhibits ARGONAUTE 1 function by precluding target RNA binding to pre-assembled RISC

(2017) Erzsébet Kenesi et al.   NUCLEIC ACIDS RESEARCH

AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V-dependent loci inArabidopsis thaliana

(2017) Feng Wang et al.   PLANT JOURNAL

High throughput sequencing reveals modulation of microRNAs in Vigna mungo upon Mungbean Yellow Mosaic India Virus inoculation highlighting stress regulation

(2017) Anirban Kundu et al.   PLANT SCIENCE

Lipid flippases promote antiviral silencing and the biogenesis of viral and host siRNAs inArabidopsis

(2017) Zhongxin Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biochemical and genetic functional dissection of the P38 viral suppressor of RNA silencing

(2017) Taichiro Iki et al.   RNA

Characterization of small interfering RNAs derived from Rice black streaked dwarf virus in infected maize plants by deep sequencing

(2017) Mingjun Li et al.   VIRUS RESEARCH

Transcriptome-wide identification of host genes targeted by tomato spotted wilt virus-derived small interfering RNAs

(2017) Shunmugiah V. Ramesh et al.   VIRUS RESEARCH

Identification and characterization of two RNA silencing suppressors encoded by ophioviruses

(2017) Gabriel Robles Luna et al.   VIRUS RESEARCH

Developments in Plant Negative-Strand RNA Virus Reverse Genetics

(2016) Andrew O. Jackson et al.   Annual Review of Phytopathology

Multiple virus resistance using artificial trans-acting siRNAs

(2016) Lingyun Chen et al.   JOURNAL OF VIROLOGICAL METHODS

The P1N-PISPOtrans-Frame Gene of Sweet Potato Feathery Mottle Potyvirus Is Produced during Virus Infection and Functions as an RNA Silencing Suppressor

(2016) Ares Mingot et al.   JOURNAL OF VIROLOGY

Double-stranded RNAs induce a pattern-triggered immune signaling pathway in plants

(2016) Annette Niehl et al.   NEW PHYTOLOGIST

Lettuce chlorosis virusP23 Suppresses RNA Silencing and Induces Local Necrosis with Increased Severity at Raised Temperatures

(2016) Kenji Kubota et al.   PHYTOPATHOLOGY

Upregulation of LINC-AP2 is negatively correlated with AP2 gene expression with Turnip crinkle virus infection in Arabidopsis thaliana

(2016) Ruimin Gao et al.   PLANT CELL REPORTS

Dimeric artificial microRNAs mediate high resistance to RSV and RBSDV in transgenic rice plants

(2016) Lin Sun et al.   PLANT CELL TISSUE AND ORGAN CULTURE

A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway

(2016) Huacai Wang et al.   PLANT PHYSIOLOGY

Generation of transgenic watermelon resistance to Cucumber mosaic virus facilitated by an effective Agrobacterium -mediated transformation method

(2016) Lifeng Liu et al.   SCIENTIA HORTICULTURAE

miRNA Biogenesis: A Dynamic Pathway

(2016) Natalia P. Achkar et al.   TRENDS IN PLANT SCIENCE

Evaluation and identification of candidate genes for artificial microRNA-mediated resistance to tomato spotted wilt virus

(2016) Neena Mitter et al.   VIRUS RESEARCH

Long noncoding RNAs in viral infections

(2016) Puri Fortes et al.   VIRUS RESEARCH

Pathogenesis mediated by proviral host factors involved in translation and replication of plant positive-strand RNA viruses

(2016) Kiwamu Hyodo et al.   Current Opinion in Virology

Different Virus-Derived siRNAs Profiles between Leaves and Fruits in Cucumber Green Mottle Mosaic Virus-Infected Lagenaria siceraria Plants

(2016) Junmin Li et al.   Frontiers in Microbiology

Identification and characterization of microRNAs from in vitro-grown pear shoots infected with Apple stem grooving virus in response to high temperature using small RNA sequencing

(2015) Juan Liu et al.   BMC GENOMICS

Genome-wide view of natural antisense transcripts in Arabidopsis thaliana

(2015) C. Yuan et al.   DNA RESEARCH

Polycistronic artificial miRNA-mediated resistance to W heat dwarf virus in barley is highly efficient at low temperature

(2015) András Kis et al.   MOLECULAR PLANT PATHOLOGY

Development of plants resistant to tomato geminiviruses using artificial trans-acting small interfering RNA

(2015) Archana Singh et al.   MOLECULAR PLANT PATHOLOGY

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Induced folding in RNA recognition byArabidopsis thalianaDCL1

(2015) Irina P. Suarez et al.   NUCLEIC ACIDS RESEARCH

Sp-miR396a-5p acts as a stress-responsive genes regulator by conferring tolerance to abiotic stresses and susceptibility to Phytophthora nicotianae infection in transgenic tobacco

(2015) Lei Chen et al.   PLANT CELL REPORTS

Virus tolerance and recovery from viral induced-symptoms in plants are associated with transcriptome reprograming

(2015) Louis Bengyella et al.   PLANT MOLECULAR BIOLOGY

Mungbean yellow mosaic Indian virus encoded AC2 protein suppresses RNA silencing by inhibiting Arabidopsis RDR6 and AGO1 activities

(2015) Vikash Kumar et al.   VIROLOGY

viral silencing suppressors: Tools forged to fine-tune host-pathogen coexistence

(2015) Tibor Csorba et al.   VIROLOGY

p2 of Rice grassy stunt virus (RGSV) and p6 and p9 of Rice ragged stunt virus (RRSV) isolates from Vietnam exert suppressor activity on the RNA silencing pathway

(2015) Thanh Duc Nguyen et al.   VIRUS GENES

Host Recovery and Reduced Virus Level in the Upper Leaves after Potato virus Y Infection Occur in Tobacco and Tomato but not in Potato Plants

(2015) Xianzhou Nie et al.   Viruses-Basel

Editorial overview: Viral pathogenesis

(2015) Luca G Guidotti et al.   Current Opinion in Virology

Roles and Programming of Arabidopsis ARGONAUTE Proteins during Turnip Mosaic Virus Infection

(2015) Hernan Garcia-Ruiz et al.   PLoS Pathogens

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

(2015) Todd Blevins et al.   eLife

Biogenesis, Function, and Applications of Virus-Derived Small RNAs in Plants

(2015) Chao Zhang et al.   Frontiers in Microbiology

Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection

(2015) Jinyan Wang et al.   Scientific Reports

Small RNAs: A New Paradigm in Plant-Microbe Interactions

(2014) Arne Weiberg et al.   Annual Review of Phytopathology

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Different roles for RNA silencing and RNA processing components in virus recovery and virus-induced gene silencing in plants

(2014) Xiaofang Ma et al.   JOURNAL OF EXPERIMENTAL BOTANY

A viral transcription factor exhibits antiviral RNA silencing suppression activity independent of its nuclear localization

(2014) N. I. Lukhovitskaya et al.   JOURNAL OF GENERAL VIROLOGY

A critical domain ofSweet potato chlorotic fleck virusnucleotide-binding protein (NaBp) for RNA silencing suppression, nuclear localization and viral pathogenesis

(2014) Xing-Guang Deng et al.   MOLECULAR PLANT PATHOLOGY

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing

(2014) Jean-Sébastien Parent et al.   PLANT JOURNAL

Post-transcriptional and Epigenetic Arms of RNA Silencing: A Defense Machinery of Naturally Tolerant Tomato Plant Against Tomato Leaf Curl New Delhi Virus

(2014) Pranav Pankaj Sahu et al.   PLANT MOLECULAR BIOLOGY REPORTER

Suppress to Survive—Implication of Plant Viruses in PTGS

(2014) Przemysław Wieczorek et al.   PLANT MOLECULAR BIOLOGY REPORTER

Using a Viral Vector to Reveal the Role of MicroRNA159 in Disease Symptom Induction by a Severe Strain of Cucumber mosaic virus

(2014) Z. Du et al.   PLANT PHYSIOLOGY

Tomato yellow leaf curl virus resistance by Ty-1 involves increased cytosine methylation of viral genomes and is compromised by cucumber mosaic virus infection

(2014) P. Butterbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs inArabidopsis

(2014) Mengji Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature-dependent symptom recovery in Nicotiana benthamiana plants infected with tomato ringspot virus is associated with reduced translation of viral RNA2 and requires ARGONAUTE 1

(2014) Basudev Ghoshal et al.   VIROLOGY

Broad bean wilt virus 2 encoded VP53, VP37 and large capsid protein orchestrate suppression of RNA silencing in plant

(2014) Lingfang Kong et al.   VIRUS RESEARCH

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Mutational analysis of two highly conserved motifs in the silencing suppressor encoded by tomato spotted wilt virus (genus Tospovirus, family Bunyaviridae)

(2013) Ying Zhai et al.   ARCHIVES OF VIROLOGY

Identification of the domains of cauliflower mosaic virus protein P6 responsible for suppression of RNA silencing and salicylic acid signalling

(2013) J. Laird et al.   JOURNAL OF GENERAL VIROLOGY

Arabidopsis Double-Stranded RNA Binding Protein DRB3 Participates in Methylation-Mediated Defense against Geminiviruses

(2013) P. Raja et al.   JOURNAL OF VIROLOGY

Unrelated viral suppressors of RNA silencing mediate the control of ARGONAUTE1 level

(2013) Éva Várallyay et al.   MOLECULAR PLANT PATHOLOGY

RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence

(2013) Nathan Pumplin et al.   NATURE REVIEWS MICROBIOLOGY

Plant Immune Responses Against Viruses: How Does a Virus Cause Disease?

(2013) Kranthi K. Mandadi et al.   PLANT CELL

RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice

(2012) Wen-Jin Shen et al.   ARCHIVES OF VIROLOGY

Identification of an RNA silencing suppressor encoded by Grapevine leafroll-associated virus 3

(2012) Paulo Gouveia et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Temperature-Dependent Survival of Turnip Crinkle Virus-Infected Arabidopsis Plants Relies on an RNA Silencing-Based Defense That Requires DCL2, AGO2, and HEN1

(2012) X. Zhang et al.   JOURNAL OF VIROLOGY

Switching on RNA Silencing Suppressor Activity by Restoring Argonaute Binding to a Viral Protein

(2012) E. Z. Szabo et al.   JOURNAL OF VIROLOGY

Multiple Domains of the Tobacco mosaic virus p126 Protein Can Independently Suppress Local and Systemic RNA Silencing

(2012) Li-Ya Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

CDKF;1 and CDKD Protein Kinases Regulate Phosphorylation of Serine Residues in the C-Terminal Domain ofArabidopsisRNA Polymerase II

(2012) Mohsen Hajheidari et al.   PLANT CELL

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA binding is more critical to the suppression of silencing function of Cucumber mosaic virus 2b protein than nuclear localization

(2012) I. Gonzalez et al.   RNA

The Enamovirus P0 protein is a silencing suppressor which inhibits local and systemic RNA silencing through AGO1 degradation

(2012) Adriana F. Fusaro et al.   VIROLOGY

Transgenic tomato plants expressing artificial microRNAs for silencing the pre-coat and coat proteins of a begomovirus, Tomato leaf curl New Delhi virus, show tolerance to virus infection

(2012) Tien Van Vu et al.   VIRUS RESEARCH

Viral induction and suppression of RNA silencing in plants

(2011) Hanako Shimura et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The role of Mediator in small and long noncoding RNA production inArabidopsis thaliana

(2011) Yun Ju Kim et al.   EMBO JOURNAL

p2 of Rice stripe virus (RSV) interacts with OsSGS3 and is a silencing suppressor

(2011) ZHENGUO DU et al.   MOLECULAR PLANT PATHOLOGY

Multiple artificial microRNAs targeting conserved motifs of the replicase gene confer robust transgenic resistance to negative-sense single-stranded RNA plant virus

(2011) YI-JUNG KUNG et al.   MOLECULAR PLANT PATHOLOGY

Mutations in the Antiviral RNAi Defense Pathway Modify Brome mosaic virus RNA Recombinant Profiles

(2011) Aleksandra Dzianott et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Resistance to Wheat streak mosaic virus generated by expression of an artificial polycistronic microRNA in wheat

(2011) Muhammad Fahim et al.   PLANT BIOTECHNOLOGY JOURNAL

BSCTV C2 Attenuates the Degradation of SAMDC1 to Suppress DNA Methylation-Mediated Gene Silencing inArabidopsis

(2011) Zhonghui Zhang et al.   PLANT CELL

The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes inArabidopsis thaliana

(2011) Xian-Bing Wang et al.   PLANT CELL

An Antiviral Defense Role of AGO2 in Plants

(2011) Jagger J. W. Harvey et al.   PLoS One

The specific binding to 21-nt double-stranded RNAs is crucial for the anti-silencing activity of Cucumber vein yellowing virus P1b and perturbs endogenous small RNA populations

(2011) A. Valli et al.   RNA

Specific requirement of DRB4, a dsRNA-binding protein, for the in vitro dsRNA-cleaving activity of Arabidopsis Dicer-like 4

(2011) A. Fukudome et al.   RNA

Viral Small Interfering RNAs Target Host Genes to Mediate Disease Symptoms in Plants

(2011) Neil A. Smith et al.   PLoS Pathogens

Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation

(2010) Éva Várallyay et al.   EMBO JOURNAL

Size-Independent and Noncooperative Recognition of dsRNA by the Rice Stripe Virus RNA Silencing Suppressor NS3

(2010) Mei Shen et al.   JOURNAL OF MOLECULAR BIOLOGY

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis

(2010) Bin Yu et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection

(2010) H. Garcia-Ruiz et al.   PLANT CELL

Expression of artificial microRNAs in tomato confers efficient and stable virus resistance in a cell-autonomous manner

(2010) Xiaohui Zhang et al.   TRANSGENIC RESEARCH

MicroRNA profiling of tomato leaf curl new delhi virus (tolcndv) infected tomato leaves indicates that deregulation of mir159/319 and mir172 might be linked with leaf curl disease

(2010) Afsar R Naqvi et al.   Virology Journal

Viral Protein Inhibits RISC Activity by Argonaute Binding through Conserved WG/GW Motifs

(2010) Ana Giner et al.   PLoS Pathogens

Roles of Plant Small RNAs in Biotic Stress Responses

(2009) Virginia Ruiz-Ferrer et al.   Annual Review of Plant Biology

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2

(2009) T. Katoh et al.   GENES & DEVELOPMENT

Geminivirus AL2 and L2 Proteins Suppress Transcriptional Gene Silencing and Cause Genome-Wide Reductions in Cytosine Methylation

(2009) R. C. Buchmann et al.   JOURNAL OF VIROLOGY

RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana

(2009) X.-B. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Viral Genome Methylation as an Epigenetic Defense against Geminiviruses

(2008) P. Raja et al.   JOURNAL OF VIROLOGY

Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1

(2008) F. Qu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1

(2008) Z. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Degradation of microRNAs by a Family of Exoribonucleases in Arabidopsis

(2008) Vanitharani Ramachandran et al.   SCIENCE