GNE: a deep learning framework for gene network inference by aggregating biological information

Recruitment of a SUMO isopeptidase to rDNA stabilizes silencing complexes by opposing SUMO targeted ubiquitin ligase activity

(2017) Jason Liang et al.   GENES & DEVELOPMENT

Global landscape of cell envelope protein complexes in Escherichia coli

(2017) Mohan Babu et al.   NATURE BIOTECHNOLOGY

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

(2017) Jason E. Miller et al.   G3-Genes Genomes Genetics

Compact Integration of Multi-Network Topology for Functional Analysis of Genes

(2016) Hyunghoon Cho et al.   Cell Systems

Protein–protein interactions and genetic diseases: The interactome

(2014) Kasper Lage   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Exploitation of genetic interaction network topology for the prediction of epistatic behavior

(2013) Gregorio Alanis-Lobato et al.   GENOMICS

Genetic interaction networks: better understand to better predict

(2013) Benjamin Boucher et al.   Frontiers in Genetics

Assessing and predicting protein interactions by combining manifold embedding with multiple information integration

(2012) Ying-Ke Lei et al.   BMC BIOINFORMATICS

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

DOOR: a database for prokaryotic operons

(2008) Fenglou Mao et al.   NUCLEIC ACIDS RESEARCH

Defining genetic interaction

(2008) R. Mani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA