Heterozygous diploid structure of Amorphotheca resinae ZN1 contributes efficient biodetoxification on solid pretreated corn stover

Engineering Pediococcus acidilactici with xylose assimilation pathway for high titer cellulosic l -lactic acid fermentation

(2018) Zhongyang Qiu et al.   BIORESOURCE TECHNOLOGY

Fermentative production of high titer gluconic and xylonic acids from corn stover feedstock by Gluconobacter oxydans and techno-economic analysis

(2016) Hongsen Zhang et al.   BIORESOURCE TECHNOLOGY

Acceleration of biodetoxification on dilute acid pretreated lignocellulose feedstock by aeration and the consequent ethanol fermentation evaluation

(2016) Yanqing He et al.   Biotechnology for Biofuels

Identification and functional evaluation of the reductases and dehydrogenases from Saccharomyces cerevisiae involved in vanillin resistance

(2016) Xinning Wang et al.   BMC BIOTECHNOLOGY

Rapid and Effective DNA Extraction Method with Bead Grinding for a Large Amount of Fungal DNA

(2016) M. WATANABE et al.   JOURNAL OF FOOD PROTECTION

Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment

(2015) Xia Yi et al.   Biotechnology for Biofuels

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Analysis of biodegradation performance of furfural and 5-hydroxymethylfurfural by Amorphotheca resinae ZN1

(2014) Hong Ran et al.   Biotechnology for Biofuels

Helically agitated mixing in dry dilute acid pretreatment enhances the bioconversion of corn stover into ethanol

(2014) Yanqing He et al.   Biotechnology for Biofuels

Biological detoxification of furfural and 5-hydroxyl methyl furfural in hydrolysate of oil palm empty fruit bunch by Enterobacter sp. FDS8

(2013) Dongxu Zhang et al.   BIOCHEMICAL ENGINEERING JOURNAL

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Bioconversion of lignocellulose: inhibitors and detoxification

(2013) Leif J Jönsson et al.   Biotechnology for Biofuels

Physical linkage of metabolic genes in fungi is an adaptation against the accumulation of toxic intermediate compounds

(2013) K. L. McGary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

(2013) Stefanie Traeger et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Pretreatment: The key to efficient utilization of lignocellulosic materials

(2012) Mats Galbe et al.   BIOMASS & BIOENERGY

The use of high-solids loadings in biomass pretreatment-a review

(2012) Alicia A. Modenbach et al.   BIOTECHNOLOGY AND BIOENGINEERING

Understanding physiological responses to pre-treatment inhibitors in ethanologenic fermentations

(2012) Mark P. Taylor et al.   Biotechnology Journal

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Molecular mechanisms of yeast tolerance and in situ detoxification of lignocellulose hydrolysates

(2011) Z. Lewis Liu   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Dry pretreatment of lignocellulose with extremely low steam and water usage for bioethanol production

(2011) Jian Zhang et al.   BIORESOURCE TECHNOLOGY

Onsite bio-detoxification of steam-exploded corn stover for cellulosic ethanol production

(2011) Yanling Yu et al.   BIORESOURCE TECHNOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Biodetoxification of toxins generated from lignocellulose pretreatment using a newly isolated fungus, Amorphotheca resinae ZN1, and the consequent ethanol fermentation

(2010) Jian Zhang et al.   Biotechnology for Biofuels

Biological detoxification of different hemicellulosic hydrolysates using Issatchenkia occidentalis CCTCC M 206097 yeast

(2010) Bruno Guedes Fonseca et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Biofuel via biodetoxification

(2010) Hongwei Dong et al.   Nature Chemical Biology

Identification and characterization of the furfural and 5-(hydroxymethyl)furfural degradation pathways of Cupriavidus basilensis HMF14

(2010) F. Koopman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Silencing of NADPH-Dependent Oxidoreductase Genes (yqhD and dkgA) in Furfural-Resistant Ethanologenic Escherichia coli

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Comparative analysis of transcriptional and physiological responses of Bacillus cereus to organic and inorganic acid shocks

(2009) Maarten Mols et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Isolation and characterization ofCupriavidus basilensisHMF14 for biological removal of inhibitors from lignocellulosic hydrolysate

(2009) Nick Wierckx et al.   Microbial Biotechnology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Biological detoxification of waste house wood hydrolysate using Ureibacillus thermosphaericus for bioethanol production

(2008) Naoyuki Okuda et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

How biotech can transform biofuels

(2008) Lee R Lynd et al.   NATURE BIOTECHNOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY

Pretreatment: the key to unlocking low-cost cellulosic ethanol

(2007) Bin Yang et al.   Biofuels Bioproducts & Biorefining-Biofpr