Robust pathway-based multi-omics data integration using directed random walks for survival prediction in multiple cancer studies

MOBCdb: a comprehensive database integrating multi-omics data on breast cancer for precision medicine

(2018) Bingbing Xie et al.   BREAST CANCER RESEARCH AND TREATMENT

Polo-like kinase 4 mediates epithelial–mesenchymal transition in neuroblastoma via PI3K/Akt signaling pathway

(2018) Xiangdong Tian et al.   Cell Death & Disease

Olfactory Receptors as Biomarkers in Human Breast Carcinoma Tissues

(2018) Lea Weber et al.   Frontiers in Oncology

Catecholamines profiles at diagnosis: Increased diagnostic sensitivity and correlation with biological and clinical features in neuroblastoma patients

(2017) Iedan R.N. Verly et al.   EUROPEAN JOURNAL OF CANCER

More Is Better: Recent Progress in Multi-Omics Data Integration Methods

(2017) Sijia Huang et al.   Frontiers in Genetics

miR-411-5p inhibits proliferation and metastasis of breast cancer cell via targeting GRB2

(2016) Yunda Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The somatic mutation profiles of 2,433 breast cancers refines their genomic and transcriptomic landscapes

(2016) Bernard Pereira et al.   Nature Communications

rCGH: a comprehensive array-based genomic profile platform for precision medicine

(2015) Frederic Commo et al.   BIOINFORMATICS

The impact of human copy number variation on gene expression: Figure 1

(2015) Eric R. Gamazon et al.   Briefings in Functional Genomics

Integrative network analysis for survival-associated gene-gene interactions across multiple genomic profiles in ovarian cancer

(2015) Hyun-hwan Jeong et al.   Journal of Ovarian Research

Topologically inferring pathway activity toward precise cancer classification via integrating genomic and metabolomic data: prostate cancer as a case

(2015) Wei Liu et al.   Scientific Reports

PI3K/Akt signaling pathway triggers P2X7 receptor expression as a pro-survival factor of neuroblastoma cells under limiting growth conditions

(2015) Rosa Gómez-Villafuertes et al.   Scientific Reports

Lithocholic bile acid selectively kills neuroblastoma cells, while sparing normal neuronal cells

(2015) Alexander A. Goldberg et al.   Oncotarget

Incorporating inter-relationships between different levels of genomic data into cancer clinical outcome prediction

(2014) Dokyoon Kim et al.   METHODS

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

(2014) Charles Wang et al.   NATURE BIOTECHNOLOGY

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

(2014)   NATURE BIOTECHNOLOGY

Promotion of Cancer Cell Invasiveness and Metastasis Emergence Caused by Olfactory Receptor Stimulation

(2014) Guenhaël Sanz et al.   PLoS One

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures

(2014) Sarah A. Munro et al.   Nature Communications

Topologically inferring risk-active pathways toward precise cancer classification by directed random walk

(2013) Wei Liu et al.   BIOINFORMATICS

GSVA: gene set variation analysis for microarray and RNA-Seq data

(2013) Sonja Hänzelmann et al.   BMC BIOINFORMATICS

An siRNA screen identifies the GNAS locus as a driver in 20q amplified breast cancer

(2013) I Garcia-Murillas et al.   ONCOGENE

Role of viruses in the development of breast cancer

(2013) Kenneth Alibek et al.   Infectious Agents and Cancer

DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference

(2011) Yan Jiao et al.   BMC BIOINFORMATICS

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

The role of human papillomavirus infection in breast cancer

(2011) Ting Wang et al.   MEDICAL ONCOLOGY

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

(2010) Charles J. Vaske et al.   BIOINFORMATICS

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor

(2009) Jitao David Zhang et al.   BIOINFORMATICS

The PI3K/Akt/mTOR Pathway as Therapeutic Target in Neuroblastoma

(2009) S. Fulda   CURRENT CANCER DRUG TARGETS

Copy number variation influences gene expression and metabolic traits in mice

(2009) Luz D. Orozco et al.   HUMAN MOLECULAR GENETICS

Alcoholism: A Systems Approach From Molecular Physiology to Addictive Behavior

(2009) Rainer Spanagel   PHYSIOLOGICAL REVIEWS

Accurate and Reliable Cancer Classification Based on Probabilistic Inference of Pathway Activity

(2009) Junjie Su et al.   PLoS One

Inferring Pathway Activity toward Precise Disease Classification

(2008) Eunjung Lee et al.   PLoS Computational Biology