DeepPASTA: deep neural network based polyadenylation site analysis

Inference of the human polyadenylation code

(2018) Michael K K Leung et al.   BIOINFORMATICS

DeepPolyA: A Convolutional Neural Network Approach for Polyadenylation Site Prediction

(2018) Xin Gao et al.   IEEE Access

DeeReCT-PolyA: a robust and generic deep learning method for PAS identification

(2018) Zhihao Xia et al.   BIOINFORMATICS

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

(2016) David R. Kelley et al.   GENOME RESEARCH

Alternative polyadenylation of mRNA precursors

(2016) Bin Tian et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Poly(A) code analyses reveal key determinants for tissue-specific mRNA alternative polyadenylation

(2016) Lingjie Weng et al.   RNA

Evolution and Biological Roles of Alternative 3′UTRs

(2016) Christine Mayr   TRENDS IN CELL BIOLOGY

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

(2015) Babak Alipanahi et al.   NATURE BIOTECHNOLOGY

Predicting effects of noncoding variants with deep learning–based sequence model

(2015) Jian Zhou et al.   NATURE METHODS

GraphProt: modeling binding preferences of RNA-binding proteins

(2014) Daniel Maticzka et al.   GENOME BIOLOGY

Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation

(2013) D. Hafez et al.   BIOINFORMATICS

Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements

(2012) Lucy W. Barrett et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

RNA Binding Protein/RNA Element Interactions and the Control of Translation

(2012) Xavier Pichon et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

A quantitative atlas of polyadenylation in five mammals

(2012) Adnan Derti et al.   GENOME RESEARCH

Global or local? Predicting secondary structure and accessibility in mRNAs

(2012) Sita J. Lange et al.   NUCLEIC ACIDS RESEARCH

An in-depth map of polyadenylation sites in cancer

(2012) Yuefeng Lin et al.   NUCLEIC ACIDS RESEARCH

Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences

(2011) Manal Kalkatawi et al.   BIOINFORMATICS

Mechanisms and Consequences of Alternative Polyadenylation

(2011) Dafne Campigli Di Giammartino et al.   MOLECULAR CELL

POLYAR, a new computer program for prediction of poly(A) sites in human sequences

(2010) Malik Akhtar et al.   BMC GENOMICS

3′ end mRNA processing: molecular mechanisms and implications for health and disease

(2008) Sven Danckwardt et al.   EMBO JOURNAL