In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation

Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon

(2018) Anna I Vickrey et al.   eLife

Visualization of tumor heterogeneity by in situ padlock probe technology in colorectal cancer

(2017) Amin El-Heliebi et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Genomics of coloration in natural animal populations

(2017) Luis M. San-Jose et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting

(2017) Ludovic Dutoit et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The biology of color

(2017) Innes C. Cuthill et al.   SCIENCE

Comparative Transcriptome Analysis of Raccoon Dog Skin to Determine Melanin Content in Hair and Melanin Distribution in Skin

(2017) Zhanyu Du et al.   Scientific Reports

Genetic Basis for Red Coloration in Birds

(2016) Ricardo J. Lopes et al.   CURRENT BIOLOGY

Red Carotenoid Coloration in the Zebra Finch Is Controlled by a Cytochrome P450 Gene Cluster

(2016) Nicholas I. Mundy et al.   CURRENT BIOLOGY

Candidate Gene Analysis Suggests Untapped Genetic Complexity in Melanin-Based Pigmentation in Birds

(2016) Yann X. C. Bourgeois et al.   JOURNAL OF HEREDITY

Making sense of genomic islands of differentiation in light of speciation

(2016) Jochen B. W. Wolf et al.   NATURE REVIEWS GENETICS

Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex

(2016) Nagarjun Vijay et al.   Nature Communications

Spatial sexual dimorphism of X and Y homolog gene expression in the human central nervous system during early male development

(2016) Martin M. Johansson et al.   Biology of Sex Differences

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Transcriptomics of colour patterning and coloration shifts in crows

(2015) J. W. Poelstra et al.   MOLECULAR ECOLOGY

A supergene determines highly divergent male reproductive morphs in the ruff

(2015) Clemens Küpper et al.   NATURE GENETICS

Development, Regeneration, and Evolution of Feathers

(2015) Chih-Feng Chen et al.   Annual Review of Animal Biosciences

How carrion and hooded crows defeat Linnaeus's curse

(2014) P. de Knijff   SCIENCE

A Jurassic ornithischian dinosaur from Siberia with both feathers and scales

(2014) P. Godefroit et al.   SCIENCE

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Disputed islands

(2014) E. Pennisi   SCIENCE

Using observation-level random effects to model overdispersion in count data in ecology and evolution

(2014) Xavier A. Harrison   PeerJ

An extensive candidate gene approach to speciation: diversity, divergence and linkage disequilibrium in candidate pigmentation genes across the European crow hybrid zone

(2013) J W Poelstra et al.   HEREDITY

Alternation of clear-cut colour patterns inCorvuscrow evolution accords with learning-dependent social selection against unusual-looking conspecifics

(2013) Tiziano Londei   IBIS

In situ sequencing for RNA analysis in preserved tissue and cells

(2013) Rongqin Ke et al.   NATURE METHODS

In situ detection of individual mRNA molecules and protein complexes or post-translational modifications using padlock probes combined with the in situ proximity ligation assay

(2013) Irene Weibrecht et al.   Nature Protocols

Melanins and melanogenesis: methods, standards, protocols

(2013) Marco d'Ischia et al.   Pigment Cell & Melanoma Research

Lipocalin-type prostaglandin D synthase as a marker for the proliferative potential of melanocyte-lineage cells in the human skin

(2012) Miwa SHIMANUKI et al.   JOURNAL OF DERMATOLOGY

Accelerated speciation in colour-polymorphic birds

(2012) Andrew F. Hugall et al.   NATURE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Unraveling the thread of nature’s tapestry: the genetics of diversity and convergence in animal pigmentation

(2012) Marcus R. Kronforst et al.   Pigment Cell & Melanoma Research

Identification of Genes Related to White and Black Plumage Formation by RNA-Seq from White and Black Feather Bulbs in Ducks

(2012) Shijun Li et al.   PLoS One

Prostaglandin D2 production in FM55 melanoma cells is regulated by α-melanocyte-stimulating hormone and is not related to melanin production

(2010) Mojgan Masoodi et al.   EXPERIMENTAL DERMATOLOGY

“Transcription physiology” of pigment formation in melanocytes: central role of MITF

(2010) Jiri Vachtenheim et al.   EXPERIMENTAL DERMATOLOGY

In situ detection and genotyping of individual mRNA molecules

(2010) Chatarina Larsson et al.   NATURE METHODS

Convergence in pigmentation at multiple levels: mutations, genes and function

(2010) M. Manceau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Vertebrate pigmentation: from underlying genes to adaptive function

(2010) Joanna K. Hubbard et al.   TRENDS IN GENETICS