Antarctic blackfin icefish genome reveals adaptations to extreme environments

Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

(2018) J. Auvinet et al.   BMC GENOMICS

Bioinformatic analyses of zona pellucida genes in vertebrates and their expression in Nile tilapia

(2018) Tianli Wu et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Comparison of Egg Envelope Thickness in Teleosts and its Relationship to the Sites of ZP Protein Synthesis

(2017) Kaori Sano et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Antarctic fish versus human cytoglobins – The same but yet so different

(2017) Bert Cuypers et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

Antioxidant defense system and oxidative status in Antarctic fishes: The sluggish rockcod Notothenia coriiceps versus the active marbled notothen Notothenia rossii

(2017) Roberta Daniele Klein et al.   JOURNAL OF THERMAL BIOLOGY

De Novo Gene Evolution of Antifreeze Glycoproteins in Codfishes Revealed by Whole Genome Sequence Data

(2017) Helle Tessand Baalsrud et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization and husbandry of wild broodstock of the blackfin icefish Chaenocephalus aceratus (Lönnberg 1906) from the Palmer Archipelago (Southern Ocean) for breeding purposes

(2017) Nathalie R. Le François et al.   POLAR BIOLOGY

Cold Fusion: Massive Karyotype Evolution in the Antarctic Bullhead Notothen Notothenia coriiceps

(2017) Angel Amores et al.   G3-Genes Genomes Genetics

Evolution in an extreme environment: developmental biases and phenotypic integration in the adaptive radiation of antarctic notothenioids

(2016) Yinan Hu et al.   BMC EVOLUTIONARY BIOLOGY

Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish

(2016) Thomas Desvignes et al.   Marine Genomics

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

(2016) Ingo Braasch et al.   NATURE GENETICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants

(2015) T. Desvignes et al.   TRENDS IN GENETICS

Expanding the annotation of zebrafish microRNAs based on small RNA sequencing

(2014) Thomas Desvignes et al.   GENE

A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo

(2014) Ingo Braasch et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Divergence in skeletal mass and bone morphology in antarctic notothenioid fishes

(2014) Joseph T. Eastman et al.   JOURNAL OF MORPHOLOGY

Comparative genomics reveals insights into avian genome evolution and adaptation

(2014) G. Zhang et al.   SCIENCE

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

(2014) Cai Li et al.   GigaScience

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Exposure to critical thermal maxima increases oxidative stress in hearts of white- but not red-blooded Antarctic notothenioid fishes

(2012) I. A. Mueller et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Whole-Genome Duplication and the Functional Diversification of Teleost Fish Hemoglobins

(2012) Juan C. Opazo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Antarctic and Southern Ocean influences on Late Pliocene global cooling

(2012) R. McKay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

(2011) Angel Amores et al.   GENETICS

Assembly of the antifreeze glycoprotein/trypsinogen-like protease genomic locus in the Antarctic toothfish Dissostichus mawsoni (Norman)

(2011) Jessie Nicodemus-Johnson et al.   GENOMICS

Inter-relationship between mitochondrial function and susceptibility to oxidative stress in red- and white-blooded Antarctic notothenioid fishes

(2011) I. A. Mueller et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

The genome sequence of Atlantic cod reveals a unique immune system

(2011) Bastiaan Star et al.   NATURE

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes

(2010) R Craig Albertson et al.   BMC EVOLUTIONARY BIOLOGY

The Unique Mitochondrial Form and Function of Antarctic Channichthyid Icefishes

(2010) K. M. O'Brien et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

ZFIN: enhancements and updates to the zebrafish model organism database

(2010) Y. Bradford et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Geographic intraspecific variation in buoyancy within Antarctic notothenioid fishes

(2008) Thomas J. Near et al.   ANTARCTIC SCIENCE

Cold-adapted Antarctic fish: The discovery of neuroglobin in the dominant suborder Notothenioidei

(2008) C.-H. Christina Cheng et al.   GENE

Zona Pellucida Glycoproteins

(2008) Paul M. Wassarman   JOURNAL OF BIOLOGICAL CHEMISTRY