Distilling Robust Design Principles of Biocircuits Using Mixed Integer Dynamic Optimization

Towards an Aspect-Oriented Design and Modelling Framework for Synthetic Biology

(2018) Philipp Boeing et al.   Processes

L p -Adaptation: Simultaneous Design Centering and Robustness Estimation of Electronic and Biological Systems

(2017) Josefine Asmus et al.   Scientific Reports

Automated Design Framework for Synthetic Biology Exploiting Pareto Optimality

(2017) Irene Otero-Muras et al.   ACS Synthetic Biology

SYNBADm: a tool for optimization-based automated design of synthetic gene circuits

(2016) Irene Otero-Muras et al.   BIOINFORMATICS

Design Principles of Biological Oscillators through Optimization: Forward and Reverse Analysis

(2016) Irene Otero-Muras et al.   PLoS One

A Statistical Approach Reveals Designs for the Most Robust Stochastic Gene Oscillators

(2016) Mae L. Woods et al.   ACS Synthetic Biology

Multicriteria global optimization for biocircuit design

(2014) Irene Otero-Muras et al.   BMC Systems Biology

Automatic Generation of Predictive Dynamic Models Reveals Nuclear Phosphorylation as the Key Msn2 Control Mechanism

(2013) M. Sunnaker et al.   Science Signaling

Efficient characterization of high-dimensional parameter spaces for systems biology

(2011) Elías Zamora-Sillero et al.   BMC Systems Biology

Bayesian design of synthetic biological systems

(2011) C. P. Barnes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defining Network Topologies that Can Achieve Biochemical Adaptation

(2009) Wenzhe Ma et al.   CELL

An evolutionary method for complex-process optimization

(2009) Jose A. Egea et al.   COMPUTERS & OPERATIONS RESEARCH

Computational design tools for synthetic biology

(2009) Mario A Marchisio et al.   CURRENT OPINION IN BIOTECHNOLOGY