Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution

Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins

(2018) Daniil Nikitin et al.   Frontiers in Immunology

Mobile DNA in Health and Disease

(2017) Haig H. Kazazian et al.   NEW ENGLAND JOURNAL OF MEDICINE

Friends-Enemies: Endogenous Retroviruses Are Major Transcriptional Regulators of Human DNA

(2017) Anton A. Buzdin et al.   Frontiers in Chemistry

Somatically Acquired LINE-1 Insertions in Normal Esophagus Undergo Clonal Expansion in Esophageal Squamous Cell Carcinoma

(2016) Tara T. Doucet-O'Hare et al.   HUMAN MUTATION

Genetic drift, selection and the evolution of the mutation rate

(2016) Michael Lynch et al.   NATURE REVIEWS GENETICS

Regulatory evolution of innate immunity through co-option of endogenous retroviruses

(2016) E. B. Chuong et al.   SCIENCE

Analysis of Important Gene Ontology Terms and Biological Pathways Related to Pancreatic Cancer

(2016) Hang Yin et al.   Biomed Research International

Comparative Analysis of Gene Regulatory Networks: From Network Reconstruction to Evolution

(2015) Dawn Thompson et al.   Annual Review of Cell and Developmental Biology

The core promoter: At the heart of gene expression

(2015) Yehuda M. Danino et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

New bioinformatic tool for quick identification of functionally relevant endogenous retroviral inserts in human genome

(2015) Andrew Garazha et al.   CELL CYCLE

Molecular functions of human endogenous retroviruses in health and disease

(2015) Maria Suntsova et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Gene Expression Signatures as Biomarkers of Tumour Hypoxia

(2015) B.H.L. Harris et al.   CLINICAL ONCOLOGY

The role of regulatory variation in complex traits and disease

(2015) Frank W. Albert et al.   NATURE REVIEWS GENETICS

Comparative epigenomics: a powerful tool to understand the evolution of DNA methylation

(2015) Xuehua Zhong   NEW PHYTOLOGIST

ENCODE data at the ENCODE portal

(2015) Cricket A. Sloan et al.   NUCLEIC ACIDS RESEARCH

A method for predicting target drug efficiency in cancer based on the analysis of signaling pathway activation

(2015) Artem Artemov et al.   Oncotarget

Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks

(2015) Alys M Cheatle Jarvela et al.   EvoDevo

Signaling pathways activation profiles make better markers of cancer than expression of individual genes

(2015) Nikolay M. Borisov et al.   Oncotarget

Nucleosome signalling; An evolving concept

(2014) Bryan M. Turner   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond

(2014) Rasika Mundade et al.   CELL CYCLE

Whole genome sequencing as a means to assess pathogenic mutations in medical genetics and cancer

(2014) Beryl Royer-Bertrand et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Chromatin regulation: How complex does it get?

(2014) Karin Meier et al.   Epigenetics

Gene expression profiling for targeted cancer treatment

(2014) Anton Yuryev   Expert Opinion on Drug Discovery

Widespread contribution of transposable elements to the innovation of gene regulatory networks

(2014) Vasavi Sundaram et al.   GENOME RESEARCH

Evolution of transcription factor binding in metazoans — mechanisms and functional implications

(2014) Diego Villar et al.   NATURE REVIEWS GENETICS

Comprehensive DNA methylation and hydroxymethylation analysis in the human brain and its implication in mental disorders

(2014) Tadafumi Kato et al.   NEUROPHARMACOLOGY

Epigenomics and the concept of degeneracy in biological systems

(2013) R. Maleszka et al.   Briefings in Functional Genomics

Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation

(2013) C. Lavialle et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Origin and Evolution of Adaptive Immunity

(2013) Thomas Boehm et al.   Annual Review of Animal Biosciences

Human Transposon Tectonics

(2012) Kathleen H. Burns et al.   CELL

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Origin and Evolution of the Ribosome

(2010) G. E. Fox   Cold Spring Harbor Perspectives in Biology

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Small RNAs in transcriptional gene silencing and genome defence

(2009) Danesh Moazed   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The impact of retrotransposons on human genome evolution

(2009) Richard Cordaux et al.   NATURE REVIEWS GENETICS

DNA Damage, Aging, and Cancer

(2009) Jan H.J. Hoeijmakers   NEW ENGLAND JOURNAL OF MEDICINE

The origin and evolution of modern metabolism

(2008) Gustavo Caetano-Anollés et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

A universal classification of eukaryotic transposable elements implemented in Repbase

(2008) Vladimir V. Kapitonov et al.   NATURE REVIEWS GENETICS

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH