Genome-wide comprehensive analysis of transcriptomes and small RNAs offers insights into the molecular mechanism of alkaline stress tolerance in a citrus rootstock

The transcription factor CsbHLH18 of sweet orange functions in modulation of cold tolerance and homeostasis of reactive oxygen species by regulating the antioxidant gene

(2018) Jingjing Geng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Salt stress response triggers activation of the jasmonate signaling pathway leading to inhibition of cell elongation in Arabidopsis primary root

(2016) Camilo E. Valenzuela et al.   JOURNAL OF EXPERIMENTAL BOTANY

Jasmonic Acid Enhances Al-Induced Root Growth Inhibition

(2016) Zhong-Bao Yang et al.   PLANT PHYSIOLOGY

Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing

(2016) Juxun Wu et al.   Frontiers in Plant Science

GOplot: an R package for visually combining expression data with functional analysis: Fig. 1.

(2015) Wencke Walter et al.   BIOINFORMATICS

Root Cap-Derived Auxin Pre-patterns the Longitudinal Axis of the Arabidopsis Root

(2015) Wei Xuan et al.   CURRENT BIOLOGY

Transcription factor WRKY46 modulates the development of Arabidopsis lateral roots in osmotic/salt stress conditions via regulation of ABA signaling and auxin homeostasis

(2015) Zhong Jie Ding et al.   PLANT JOURNAL

ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses

(2015) Cham Thi Tuyet Le et al.   PLANT PHYSIOLOGY

OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice

(2015) Hua Wu et al.   PLANT SCIENCE

Molecular mechanisms governing Arabidopsis iron uptake

(2015) Tzvetina Brumbarova et al.   TRENDS IN PLANT SCIENCE

Transcription profiles of boron-deficiency-responsive genes in citrus rootstock root by suppression subtractive hybridization and cDNA microarray

(2015) Gao-Feng Zhou et al.   Frontiers in Plant Science

MTide: an integrated tool for the identification of miRNA-target interaction in plants

(2014) Z. Zhang et al.   BIOINFORMATICS

Exogenous jasmonic acid can enhance tolerance of wheat seedlings to salt stress

(2014) ZongBo Qiu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

An integrative analysis of the transcriptome and proteome of the pulp of a spontaneous late-ripening sweet orange mutant and its wild type improves our understanding of fruit ripening in citrus

(2014) Juxun Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Positive Regulatory Roles of the TIFY10 Proteins in Plant Responses to Alkaline Stress

(2014) Dan Zhu et al.   PLoS One

Selection of reliable reference genes for gene expression studies using quantitative real-time PCR in navel orange fruit development and pummelo floral organs

(2014) Juxun Wu et al.   SCIENTIA HORTICULTURAE

RICE SALT SENSITIVE3 Forms a Ternary Complex with JAZ and Class-C bHLH Factors and Regulates Jasmonate-Induced Gene Expression and Root Cell Elongation

(2013) Yosuke Toda et al.   PLANT CELL

The Tomato 14-3-3 Protein TFT4 Modulates H+ Efflux, Basipetal Auxin Transport, and the PKS5-J3 Pathway in the Root Growth Response to Alkaline Stress

(2013) W. Xu et al.   PLANT PHYSIOLOGY

Lateral root development in Arabidopsis: fifty shades of auxin

(2013) Julien Lavenus et al.   TRENDS IN PLANT SCIENCE

Over-expression of a novel JAZ family gene from Glycine soja, increases salt and alkali stress tolerance

(2012) Dan Zhu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A plant microRNA regulates the adaptation of roots to drought stress

(2012) Hao Chen et al.   FEBS LETTERS

PIN2 is required for the adaptation of Arabidopsis roots to alkaline stress by modulating proton secretion

(2012) Weifeng Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

The jasmonate pathway mediates salt tolerance in grapevines

(2012) Ahmed Ismail et al.   JOURNAL OF EXPERIMENTAL BOTANY

The jasmonate receptor COI1 plays a role in jasmonate-induced lateral root formation and lateral root positioning in Arabidopsis thaliana

(2012) Javier Raya-González et al.   JOURNAL OF PLANT PHYSIOLOGY

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

Auxin ControlsArabidopsisAdventitious Root Initiation by Regulating Jasmonic Acid Homeostasis

(2012) Laurent Gutierrez et al.   PLANT CELL

Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues

(2012) Shu-Jun Kou et al.   PLANT CELL REPORTS

Methyl Jasmonate-Induced Alteration in Lipid Peroxidation, Antioxidative Defence System and Yield in Soybean Under Drought

(2011) S. A. Anjum et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

An arginine decarboxylase gene PtADC from Poncirus trifoliata confers abiotic stress tolerance and promotes primary root growth in Arabidopsis

(2011) Jing Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Heme Oxygenase is Involved in the Protection Exerted by Jasmonic Acid Against Cadmium Stress in Soybean Roots

(2011) Guillermo Noriega et al.   JOURNAL OF PLANT GROWTH REGULATION

Jasmonate modulates endocytosis and plasma membrane accumulation of the Arabidopsis PIN2 protein

(2011) Jiaqiang Sun et al.   NEW PHYTOLOGIST

The Basic Helix-Loop-Helix Transcription Factor MYC2 Directly RepressesPLETHORAExpression during Jasmonate-Mediated Modulation of the Root Stem Cell Niche inArabidopsis

(2011) Qian Chen et al.   PLANT CELL

Hormonal Regulation of Lateral Root Development in Arabidopsis Modulated by MIZ1 and Requirement of GNOM Activity for MIZ1 Function

(2011) T. Moriwaki et al.   PLANT PHYSIOLOGY

Suppression of Fe deficiency gene expression by jasmonate

(2011) Felix Maurer et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment

(2010) Ying Ge et al.   BMC PLANT BIOLOGY

Sending mixed messages: auxin-cytokinin crosstalk in roots

(2010) Anthony Bishopp et al.   CURRENT OPINION IN PLANT BIOLOGY

Quantitative analysis of major plant hormones in crude plant extracts by high-performance liquid chromatography–mass spectrometry

(2010) Xiangqing Pan et al.   Nature Protocols

ABI4 Mediates Abscisic Acid and Cytokinin Inhibition of Lateral Root Formation by Reducing Polar Auxin Transport in Arabidopsis

(2010) D. Shkolnik-Inbar et al.   PLANT CELL

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

(2010) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The roots of a new green revolution

(2010) Griet Den Herder et al.   TRENDS IN PLANT SCIENCE

Arabidopsis ASA1 Is Important for Jasmonate-Mediated Regulation of Auxin Biosynthesis and Transport during Lateral Root Formation

(2009) J. Sun et al.   PLANT CELL

Proline accumulation in plants: a review

(2008) Nathalie Verbruggen et al.   AMINO ACIDS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Comparison of effects of salt and alkali stresses on the growth and photosynthesis of wheat

(2008) C. W. Yang et al.   PHOTOSYNTHETICA

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Phosphate Availability Alters Lateral Root Development in Arabidopsis by Modulating Auxin Sensitivity via a Mechanism Involving the TIR1 Auxin Receptor

(2008) C.-A. Perez-Torres et al.   PLANT CELL

Analysis of Gene Expression Profile of Limonium bicolor under NaHCO3 Stress Using cDNA Microarray

(2008) Yucheng Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA