Relative abundance and molecular evolution of Lake Sinai Virus (Sinaivirus) clades

The discovery of Halictivirus resolves the Sinaivirus phylogeny

(2017) Diane Bigot et al.   JOURNAL OF GENERAL VIROLOGY

Relative abundance of deformed wing virus, Varroa destructor virus 1, and their recombinants in honey bees ( Apis mellifera ) assessed by kmer analysis of public RNA-Seq data

(2017) Robert Scott Cornman   JOURNAL OF INVERTEBRATE PATHOLOGY

A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations

(2017) Emily J. Remnant et al.   JOURNAL OF VIROLOGY

Honey bee (Apis mellifera) colony health and pathogen composition in migratory beekeeping operations involved in California almond pollination

(2017) William Glenny et al.   PLoS One

Absence of deformed wing virus and Varroa destructor in Australia provides unique perspectives on honeybee viral landscapes and colony losses

(2017) John M. K. Roberts et al.   Scientific Reports

Multiyear survey targeting disease incidence in US honey bees

(2016) Kirsten S. Traynor et al.   APIDOLOGIE

Varroa destructor Macula-like virus, Lake Sinai virus and other new RNA viruses in wild bumblebee hosts ( Bombus pascuorum , Bombus lapidarius and Bombus pratorum )

(2016) Laurian Parmentier et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Elevated virulence of an emerging viral genotype as a driver of honeybee loss

(2016) Dino P. McMahon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

In vivo and in vitro infection dynamics of honey bee viruses

(2016) Jimena Carrillo-Tripp et al.   Scientific Reports

Pathogen prevalence and abundance in honey bee colonies involved in almond pollination

(2015) Ian Cavigli et al.   APIDOLOGIE

Genome sequence heterogeneity of Lake Sinai Virus found in honey bees and Orf1/RdRP-based polymorphisms in a single host

(2015) Jorgen Ravoet et al.   VIRUS RESEARCH

Honey Bee Infecting Lake Sinai Viruses

(2015) Katie Daughenbaugh et al.   Viruses-Basel

The Apis mellifera Filamentous Virus Genome

(2015) Laurent Gauthier et al.   Viruses-Basel

Genome Characterization, Prevalence and Distribution of a Macula-Like Virus from Apis mellifera and Varroa destructor

(2015) Joachim de Miranda et al.   Viruses-Basel

The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster

(2015) Claire L. Webster et al.   PLOS BIOLOGY

Honey bee colony losses and associated viruses

(2015) Alexander J McMenamin et al.   Current Opinion in Insect Science

Finding the missing honey bee genes: lessons learned from a genome upgrade

(2014) Christine G Elsik et al.   BMC GENOMICS

Bees under stress: sublethal doses of a neonicotinoid pesticide and pathogens interact to elevate honey bee mortality across the life cycle

(2014) Vincent Doublet et al.   ENVIRONMENTAL MICROBIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

The i5k Workspace@NAL—enabling genomic data access, visualization and curation of arthropod genomes

(2014) Monica Poelchau et al.   NUCLEIC ACIDS RESEARCH

Characterization of viral siRNA populations in honey bee colony collapse disorder

(2014) Nor Chejanovsky et al.   VIROLOGY

A Virulent Strain of Deformed Wing Virus (DWV) of Honeybees (Apis mellifera) Prevails after Varroa destructor-Mediated, or In Vitro, Transmission

(2014) Eugene V. Ryabov et al.   PLoS Pathogens

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Pathogen Webs in Collapsing Honey Bee Colonies

(2012) R. Scott Cornman et al.   PLoS One

Dead or Alive: Deformed Wing Virus and Varroa destructor Reduce the Life Span of Winter Honeybees

(2011) Benjamin Dainat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia

(2011) Charles Runckel et al.   PLoS One

Nutrition and health in honey bees

(2010) Robert Brodschneider et al.   APIDOLOGIE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BioMart – biological queries made easy

(2009) Damian Smedley et al.   BMC GENOMICS

Deformed wing virus: replication and viral load in mites (Varroa destructor)

(2009) S. Gisder et al.   JOURNAL OF GENERAL VIROLOGY

Deformed wing virus

(2009) Joachim R. de Miranda et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Convergent host–parasite codon usage between honeybee and bee associated viral genomes

(2008) Panuwan Chantawannakul et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS