A 24 h Age Difference Causes Twice as Much Gene Expression Divergence as 100 Generations of Adaptation to a Novel Environment

Reduced Neuronal Transcription of Escargot, the Drosophila Gene Encoding a Snail-Type Transcription Factor, Promotes Longevity

(2018) Alexander V. Symonenko et al.   Frontiers in Genetics

Lead Modulates trans- and cis-Expression Quantitative Trait Loci (eQTLs) in Drosophila melanogaster Heads

(2018) Wen Qu et al.   Frontiers in Genetics

Genetic accommodation in the wild: evolution of gene expression plasticity during character displacement

(2017) N. A. Levis et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Sex-biased transcriptome divergence along a latitudinal gradient

(2017) Scott L. Allen et al.   MOLECULAR ECOLOGY

Gene expression plasticity in response to salinity acclimation in threespine stickleback ecotypes from different salinity habitats

(2017) Taylor C. Gibbons et al.   MOLECULAR ECOLOGY

ReadTools : A universal toolkit for handling sequence data from different sequencing platforms

(2017) Daniel Gómez-Sánchez et al.   Molecular Ecology Resources

An environment-dependent transcriptional network specifies human microglia identity

(2017) David Gosselin et al.   SCIENCE

Transcriptional Regulatory Network of Plant Heat Stress Response

(2017) Naohiko Ohama et al.   TRENDS IN PLANT SCIENCE

A Generalized Linear Model for Decomposing Cis -regulatory, Parent-of-Origin, and Maternal Effects on Allele-Specific Gene Expression

(2017) Yasuaki Takada et al.   G3-Genes Genomes Genetics

Genetic and Genomic Response to Selection for Food Consumption in Drosophila melanogaster

(2016) Megan E. Garlapow et al.   BEHAVIOR GENETICS

Inferring regulatory change from gene expression: the confounding effects of tissue scaling

(2016) Stephen H. Montgomery et al.   MOLECULAR ECOLOGY

mRNA quality control is bypassed for immediate export of stress-responsive transcripts

(2016) Gesa Zander et al.   NATURE

Ancestral population reconstitution from isofemale lines as a tool for experimental evolution

(2016) Pierre Nouhaud et al.   Ecology and Evolution

Experimental Evolution of Gene Expression and Plasticity in Alternative Selective Regimes

(2016) Yuheng Huang et al.   PLoS Genetics

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Temperature-Related Reaction Norms of Gene Expression: Regulatory Architecture and Functional Implications

(2015) Jun Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic basis of transcriptome diversity inDrosophila melanogaster

(2015) Wen Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature Stress Mediates Decanalization and Dominance of Gene Expression in Drosophila melanogaster

(2015) Jun Chen et al.   PLoS Genetics

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans

(2015) Li Zhao et al.   PLoS Genetics

Tempo and mode of regulatory evolution in Drosophila

(2014) J. D. Coolon et al.   GENOME RESEARCH

Genome assembly and annotation of aDrosophila simulansstrain from Madagascar

(2014) Nicola Palmieri et al.   Molecular Ecology Resources

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Evolution of gene expression and expression plasticity in long-term experimental populations ofDrosophila melanogastermaintained under constant and variable ethanol stress

(2012) LEV Y. YAMPOLSKY et al.   MOLECULAR ECOLOGY

Population transcriptomics of Drosophila melanogaster females

(2011) Lena Müller et al.   BMC GENOMICS

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identifying candidate genes affecting developmental time in Drosophila melanogaster: pervasive pleiotropy and gene-by-environment interaction

(2008) Julián Mensch et al.   BMC DEVELOPMENTAL BIOLOGY

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

(2008) Michael J Boedigheimer et al.   BMC GENOMICS

Gene expression variation in African and European populations of Drosophila melanogaster

(2008) Stephan Hutter et al.   GENOME BIOLOGY