FuNP (Fusion of Neuroimaging Preprocessing) Pipelines: A Fully Automated Preprocessing Software for Functional Magnetic Resonance Imaging

A comparison of publicly available linear MRI stereotaxic registration techniques

(2018) Mahsa Dadar et al.   NEUROIMAGE

An evaluation of the efficacy, reliability, and sensitivity of motion correction strategies for resting-state functional MRI

(2018) Linden Parkes et al.   NEUROIMAGE

fMRIPrep: a robust preprocessing pipeline for functional MRI

(2018) Oscar Esteban et al.   NATURE METHODS

The impact of T1 versus EPI spatial normalization templates for fMRI data analyses

(2017) Vince D. Calhoun et al.   HUMAN BRAIN MAPPING

Methods for cleaning the BOLD fMRI signal

(2017) César Caballero-Gaudes et al.   NEUROIMAGE

Benchmarking of participant-level confound regression strategies for the control of motion artifact in studies of functional connectivity

(2017) Rastko Ciric et al.   NEUROIMAGE

Hand classification of fMRI ICA noise components

(2017) Ludovica Griffanti et al.   NEUROIMAGE

MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites

(2017) Oscar Esteban et al.   PLoS One

A multi-modal parcellation of human cerebral cortex

(2016) Matthew F. Glasser et al.   NATURE

The Human Connectome Project's neuroimaging approach

(2016) Matthew F Glasser et al.   NATURE NEUROSCIENCE

The preprocessed connectomes project repository of manually corrected skull-stripped T1-weighted anatomical MRI data

(2016) Benjamin Puccio et al.   GigaScience

Functional connectivity during rested wakefulness predicts vulnerability to sleep deprivation

(2015) B.T. Thomas Yeo et al.   NEUROIMAGE

Evaluation of ICA-AROMA and alternative strategies for motion artifact removal in resting state fMRI

(2015) Raimon H.R. Pruim et al.   NEUROIMAGE

ICA-AROMA: A robust ICA-based strategy for removing motion artifacts from fMRI data

(2015) Raimon H.R. Pruim et al.   NEUROIMAGE

Is fMRI “noise” really noise? Resting state nuisance regressors remove variance with network structure

(2015) Molly G. Bright et al.   NEUROIMAGE

Accelerating Neuroimage Registration through Parallel Computation of Similarity Metric

(2015) Yun-gang Luo et al.   PLoS One

Comparison of 10 brain tissue segmentation methods using revisited IBSR annotations

(2014) Sergi Valverde et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Automatic denoising of functional MRI data: Combining independent component analysis and hierarchical fusion of classifiers

(2014) Gholamreza Salimi-Khorshidi et al.   NEUROIMAGE

Dynamic functional connectivity analysis reveals transient states of dysconnectivity in schizophrenia

(2014) E. Damaraju et al.   NeuroImage-Clinical

Beyond Noise: Using Temporal ICA to Extract Meaningful Information from High-Frequency fMRI Signal Fluctuations during Rest

(2013) Roland N. Boubela et al.   Frontiers in Human Neuroscience

Human Connectome Project informatics: Quality control, database services, and data visualization

(2013) Daniel S. Marcus et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

Resting-state fMRI confounds and cleanup

(2013) Kevin Murphy et al.   NEUROIMAGE

The minimal preprocessing pipelines for the Human Connectome Project

(2013) Matthew F. Glasser et al.   NEUROIMAGE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

Accuracy and Reliability of Automated Gray Matter Segmentation Pathways on Real and Simulated Structural Magnetic Resonance Images of the Human Brain

(2012) Lucas D. Eggert et al.   PLoS One

Robust Brain Extraction Across Datasets and Comparison With Publicly Available Methods

(2011) J. E. Iglesias et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

The organization of the human cerebral cortex estimated by intrinsic functional connectivity

(2011) B. T. Thomas Yeo et al.   JOURNAL OF NEUROPHYSIOLOGY

FSL

(2011) Mark Jenkinson et al.   NEUROIMAGE

Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion

(2011) Jonathan D. Power et al.   NEUROIMAGE

Resting developments: a review of fMRI post-processing methodologies for spontaneous brain activity

(2010) Daniel S. Margulies et al.   MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE

Correspondence of the brain's functional architecture during activation and rest

(2009) S. M. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of spatial smoothing on fMRI group inferences

(2007) Michal Mikl et al.   MAGNETIC RESONANCE IMAGING