Functional Genes and Bacterial Communities During Organohalide Respiration of Chloroethenes in Microcosms of Multi-Contaminated Groundwater

Enhanced bioremediation of TCE-contaminated groundwater using gamma poly-glutamic acid as the primary substrate

(2018) Yih-Terng Sheu et al.   JOURNAL OF CLEANER PRODUCTION

Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes

(2018) Katherine Clark et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Geochemical Parameters and Reductive Dechlorination Determine Aerobic Cometabolic vs Aerobic Metabolic Vinyl Chloride Biodegradation at Oxic/Anoxic Interface of Hyporheic Zones

(2017) Siavash Atashgahi et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Simulation of combined anaerobic/aerobic bioremediation of tetrachloroethylene in groundwater by a column system

(2017) Chih-Hao Chang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Characterization of a site contaminated by chlorinated ethenes and ethanes using multi-analysis

(2016) Dugin Kaown et al.   Environmental Earth Sciences

Evaluation of the fate and transport of chlorinated ethenes in a complex groundwater system discharging to a stream in Wonju, Korea

(2015) Seong-Sun Lee et al.   JOURNAL OF CONTAMINANT HYDROLOGY

Exploiting the intrinsic microbial degradative potential for field-based in situ dechlorination of trichloroethene contaminated groundwater

(2015) Eric M. Adetutu et al.   JOURNAL OF HAZARDOUS MATERIALS

Removing environmental organic pollutants with bioremediation and phytoremediation

(2014) Jun Won Kang   BIOTECHNOLOGY LETTERS

Chlorinated volatile organic compounds (Cl-VOCs) in environment — sources, potential human health impacts, and current remediation technologies

(2014) Binbin Huang et al.   ENVIRONMENT INTERNATIONAL

Insights into organohalide respiration and the versatile catabolism ofSulfurospirillum multivoransgained from comparative genomics and physiological studies

(2014) Tobias Goris et al.   ENVIRONMENTAL MICROBIOLOGY

Chloroethene degradation and expression of Dehalococcoides dehalogenase genes in cultures originating from Yangtze sediments

(2014) Irene Kranzioch et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls

(2014) S. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Genotyping of Sulfurospirillum spp. in Mixed Cultures Allowed the Identification of a New Tetrachloroethene Reductive Dehalogenase

(2013) Géraldine F. Buttet et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dechlorination and organohalide-respiring bacteria dynamics in sediment samples of the Yangtze Three Gorges Reservoir

(2013) Irene Kranzioch et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Site-specific pre-evaluation of bioremediation technologies for chloroethene degradation

(2013) S. S. Patil et al.   International Journal of Environmental Science and Technology

Analysis of Hydrocarbon-Contaminated Groundwater Metagenomes as Revealed by High-Throughput Sequencing

(2013) Nathlee S. Abbai et al.   MOLECULAR BIOTECHNOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics

(2013) A. Rupakula et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial communities in tetrachloroethene-polluted groundwaters: A case study

(2013) Michael Kotik et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment

(2013) Jacob Bælum et al.   WATER RESEARCH

Diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer PCR screens

(2013) Laura A. Hug et al.   Frontiers in Microbiology

Unexpected Specificity of Interspecies Cobamide Transfer from Geobacter spp. to Organohalide-Respiring Dehalococcoides mccartyi Strains

(2012) Jun Yan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae

(2012) Darlene D Wagner et al.   BMC GENOMICS

Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi

(2012) F. E. Loffler et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites

(2012) Farai Maphosa et al.   Frontiers in Microbiology

Dehalogenimonas spp. can Reductively Dehalogenate High Concentrations of 1,2-Dichloroethane, 1,2-Dichloropropane, and 1,1,2-Trichloroethane

(2012) Andrew D Maness et al.   AMB Express

In situTCE degradation mediated by complex dehalorespiring communities during biostimulation processes

(2012) Eric Dugat-Bony et al.   Microbial Biotechnology

Reductive dechlorination of tetrachloroethene by a stepwise catalysis of different organohalide respiring bacteria and reductive dehalogenases

(2011) Julien Maillard et al.   BIODEGRADATION

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Effect of chloroethene concentrations and granular activated carbon on reductive dechlorination rates and growth of Dehalococcoides spp.

(2011) Özgür Aktaş et al.   BIORESOURCE TECHNOLOGY

Microbial Diversity and Changes in the Distribution of Dehalogenase Genes during Dechlorination with Different Concentrations ofcis-DCE

(2011) Kotaro Ise et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses

(2011) Yujie Men et al.   ISME Journal

Frequent concomitant presence of Desulfitobacterium spp. and “Dehalococcoides” spp. in chloroethene-dechlorinating microbial communities

(2010) Katia Rouzeau-Szynalski et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Microbial Community- And Metabolite Dynamics of an Anoxic Dechlorinating Bioreactor

(2010) Farai Maphosa et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Identification and transcriptional analysis of trans-DCE-producing reductive dehalogenases in Dehalococcoides species

(2010) Wai Ling Chow et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

When metagenomics meets stable-isotope probing: progress and perspectives

(2010) Yin Chen et al.   TRENDS IN MICROBIOLOGY

Isolation and Characterization of "Dehalococcoides" sp. Strain MB, Which Dechlorinates Tetrachloroethene to trans-1,2-Dichloroethene

(2009) D. Cheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assessment of in Situ Reductive Dechlorination Using Compound-Specific Stable Isotopes, Functional Gene PCR, and Geochemical Data

(2009) Concepción Carreón-Diazconti et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Evaluating the fate of chlorinated ethenes in streambed sediments by combining stable isotope, geochemical and microbial methods

(2009) Yumiko Abe et al.   JOURNAL OF CONTAMINANT HYDROLOGY

Quantitative detection of chloroethene-reductive bacteria Dehalococcoides spp. using alternately binding probe competitive polymerase chain reaction

(2009) Ryo Miyata et al.   MOLECULAR AND CELLULAR PROBES

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantifying Genes and Transcripts To Assess the In Situ Physiology of "Dehalococcoides" spp. in a Trichloroethene-Contaminated Groundwater Site

(2008) P. K. H. Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Monitoring Abundance and Expression of "Dehalococcoides" Species Chloroethene-Reductive Dehalogenases in a Tetrachloroethene-Dechlorinating Flow Column

(2008) S. Behrens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Detection and identification of Dehalococcoides species responsible for in situ dechlorination of trichloroethene to ethene enhanced by hydrogen-releasing compounds

(2008) Minoru Nishimura et al.   BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY

Biochemical and genetic bases of dehalorespiration

(2008) Taiki Futagami et al.   CHEMICAL RECORD

Concurrent Ethene Generation and Growth ofDehalococcoidesContaining Vinyl Chloride Reductive Dehalogenase Genes During an Enhanced Reductive Dechlorination Field Demonstration

(2008) Charlotte Scheutz et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Dehalococcoides’ Gene Transcripts As Quantitative Bioindicators of Tetrachloroethene, Trichloroethene, andcis-1,2-Dichloroethene Dehalorespiration Rates

(2008) Brian G. Rahm et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial activity and distribution during enhanced contaminant dissolution from a NAPL source zone

(2008) Benjamin K. Amos et al.   WATER RESEARCH

Competition for H2 between sulfate reduction and dechlorination in butyrate-fed anaerobic cultures

(2007) Federico Aulenta et al.   PROCESS BIOCHEMISTRY

Assessment of in situ degradation of chlorinated ethenes and bacterial community structure in a complex contaminated groundwater system

(2007) Gwenaël Imfeld et al.   WATER RESEARCH