Evolution of population structure in an estuarine‐dependent marine fish

Genetic population structure of the spotted seatrout (Cynoscion nebulosus): simultaneous examination of the mtDNA control region and microsatellite marker results

(2018) Seifu Seyoum et al.   BULLETIN OF MARINE SCIENCE

Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage

(2017) Stuart C. Willis et al.   Molecular Ecology Resources

Hierarchical structure of ecological and non-ecological processes of differentiation shaped ongoing gastropod radiation in the Malawi Basin

(2017) Bert Van Bocxlaer   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Assessing reproductive behavior important to fisheries management: a case study with red drum, Sciaenops ocellatus

(2016) Susan K. Lowerre-Barbieri et al.   ECOLOGICAL APPLICATIONS

Genomic islands of divergence linked to ecotypic variation in sockeye salmon

(2016) Wesley A. Larson et al.   MOLECULAR ECOLOGY

Selection and sex-biased dispersal in a coastal shark: the influence of philopatry on adaptive variation

(2015) D. S. Portnoy et al.   MOLECULAR ECOLOGY

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

Contactin-4 Mediates Axon-Target Specificity and Functional Development of the Accessory Optic System

(2015) Jessica A. Osterhout et al.   NEURON

Contemporary population structure and post-glacial genetic demography in a migratory marine species, the blacknose shark,Carcharhinus acronotus

(2014) D. S. Portnoy et al.   MOLECULAR ECOLOGY

Evidence for Isolation-by-Habitat among Populations of an Epiphytic Orchid Species on a Small Oceanic Island

(2014) Bertrand Mallet et al.   PLoS One

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish

(2013) Ian R. Bradbury et al.   Evolutionary Applications

A genomic island linked to ecotype divergence in Atlantic cod

(2013) Jakob Hemmer-Hansen et al.   MOLECULAR ECOLOGY

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uninformative polymorphisms bias genome scans for signatures of selection

(2012) Marius Roesti et al.   BMC EVOLUTIONARY BIOLOGY

Evidence of multiple vicariance in a marine suture-zone in the Gulf of Mexico

(2012) David S. Portnoy et al.   JOURNAL OF BIOGEOGRAPHY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Sea level history of the northern Gulf of Mexico coast and sea level rise scenarios for the near future

(2011) Joseph F. Donoghue   CLIMATIC CHANGE

Isolation by adaptation in Neochlamisus leaf beetles: host-related selection promotes neutral genomic divergence

(2011) DANIEL J. FUNK et al.   MOLECULAR ECOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Genomic divergence during speciation: causes and consequences

(2011) P. Nosil et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Increased expression of receptor phosphotyrosine phosphatase-β/ζ is associated with molecular, cellular, behavioral and cognitive schizophrenia phenotypes

(2011) N Takahashi et al.   Translational Psychiatry

Adaptation and The Origin of Species

(2010) Douglas W. Schemske   AMERICAN NATURALIST

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Magnitudes and sources of dissolved inorganic phosphorus inputs to surface fresh waters and the coastal zone: A new global model

(2010) John A. Harrison et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Analysis of Gene Order Conservation in Eukaryotes Identifies Transcriptionally and Functionally Linked Genes

(2010) Marcela Dávila López et al.   PLoS One

Population genomics of marine fishes: identifying adaptive variation in space and time

(2009) EINAR E. NIELSEN et al.   MOLECULAR ECOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

HETEROGENEOUS GENOMIC DIFFERENTIATION BETWEEN WALKING-STICK ECOTYPES: "ISOLATION BY ADAPTATION" AND MULTIPLE ROLES FOR DIVERGENT SELECTION

(2008) Patrik Nosil et al.   EVOLUTION

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Marine Stock Enhancement in Florida: A Multi-Disciplinary, Stakeholder-Supported, Accountability-Based Approach

(2008) Michael D. Tringali et al.   REVIEWS IN FISHERIES SCIENCE

Genetic effects of harvest on wild animal populations

(2008) F ALLENDORF et al.   TRENDS IN ECOLOGY & EVOLUTION