Optimization of Traced Neuron Skeleton Using Lasso-Based Model

Automated 3D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back-Tracking

(2018) Siqi Liu et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

PAT - Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3D Micrographs

(2018) Henrik Skibbe et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Segment 2D and 3D Filaments by Learning Structured and Contextual Features

(2017) Lin Gu et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A Graph-Theoretical Approach for Tracing Filamentary Structures in Neuronal and Retinal Images

(2016) Jaydeep De et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

SparseTracer: the Reconstruction of Discontinuous Neuronal Morphology in Noisy Images

(2016) Shiwei Li et al.   NEUROINFORMATICS

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level

(2016) Hui Gong et al.   Nature Communications

NeuroGPS-Tree: automatic reconstruction of large-scale neuronal populations with dense neurites

(2015) Tingwei Quan et al.   NATURE METHODS

Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons

(2015) Miroslav Radojević et al.   NEUROINFORMATICS

BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images

(2015) Hanchuan Peng et al.   NEURON

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree

(2013) Hang Xiao et al.   BIOINFORMATICS

Mapping brain circuitry with a light microscope

(2013) Pavel Osten et al.   NATURE METHODS

Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution

(2013) Hui Gong et al.   NEUROIMAGE

Neuronal Morphology Goes Digital: A Research Hub for Cellular and System Neuroscience

(2013) Ruchi Parekh et al.   NEURON

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain

(2012) L. Silvestri et al.   OPTICS EXPRESS

High-throughput Computer Method for 3D Neuronal Structure Reconstruction from the Image Stack of the Drosophila Brain and Its Applications

(2012) Ping-Chang Lee et al.   PLoS Computational Biology

Segmentation and Tracing of Single Neurons from 3D Confocal Microscope Images

(2012) S. Basu et al.   IEEE Journal of Biomedical and Health Informatics

Automatic 3D neuron tracing using all-path pruning

(2011) H. Peng et al.   BIOINFORMATICS

Sparse and combinatorial neuron labelling

(2011) Gregory SXE Jefferis et al.   CURRENT OPINION IN NEUROBIOLOGY

Principal Curves as Skeletons of Tubular Objects

(2011) Erhan Bas et al.   NEUROINFORMATICS

Neuronal Tracing for Connectomic Studies

(2011) Ju Lu   NEUROINFORMATICS

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake

(2011) Yu Wang et al.   NEUROINFORMATICS

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models

(2011) Ting Zhao et al.   NEUROINFORMATICS

Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors

(2011) Engin Türetken et al.   NEUROINFORMATICS

Split Bregman method for large scale fused Lasso

(2010) Gui-Bo Ye et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Neuron tracing in perspective

(2010) Erik Meijering   CYTOMETRY PART A

Three-dimensional neuron tracing by voxel scooping

(2009) Alfredo Rodriguez et al.   JOURNAL OF NEUROSCIENCE METHODS

Advances in viral transneuronal tracing

(2009) Gabriella Ugolini   JOURNAL OF NEUROSCIENCE METHODS

The Split Bregman Method for L1-Regularized Problems

(2009) Tom Goldstein et al.   SIAM Journal on Imaging Sciences

Enhancing Sparsity by Reweighted ℓ 1 Minimization

(2008) Emmanuel J. Candès et al.   JOURNAL OF FOURIER ANALYSIS AND APPLICATIONS

Detection of the optimal neuron traces in confocal microscopy images

(2008) Zlatko Vasilkoski et al.   JOURNAL OF NEUROSCIENCE METHODS

Genetic Dissection of Neural Circuits

(2008) Liqun Luo et al.   NEURON