Dynamic pigmentary and structural coloration within cephalopod chromatophore organs

Indole-3-acetaldehyde dehydrogenase-dependent auxin synthesis contributes to virulence of Pseudomonas syringae strain DC3000

(2018) Sheri A. McClerklin et al.   PLoS Pathogens

Natural Light-Scattering Nanoparticles Enable Visible through Short-Wave Infrared Color Modulation

(2018) Amrita Kumar et al.   Advanced Optical Materials

Spiders have rich pigmentary and structural colour palettes

(2017) Bor-Kai Hsiung et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Eye patches: Protein assembly of index-gradient squid lenses

(2017) J. Cai et al.   SCIENCE

Molecular mechanism of reflectin’s tunable biophotonic control: Opportunities and limitations for new optoelectronics

(2017) Robert Levenson et al.   APL Materials

Research Update: A minimal region of squid reflectin for vapor-induced light scattering

(2017) Patrick B. Dennis et al.   APL Materials

Self-Assembly of the Cephalopod Protein Reflectin

(2016) Kyle L. Naughton et al.   ADVANCED MATERIALS

TransRate: reference-free quality assessment of de novo transcriptome assemblies

(2016) Richard Smith-Unna et al.   GENOME RESEARCH

Color Richness in Cephalopod Chromatophores Originating from High Refractive Index Biomolecules

(2016) Sean R. Dinneen et al.   Journal of Physical Chemistry Letters

Contributions of Phenoxazone-Based Pigments to the Structure and Function of Nanostructured Granules in Squid Chromatophores

(2016) Thomas L. Williams et al.   LANGMUIR

Structure of a Highly Active Cephalopod S-crystallin Mutant: New Molecular Evidence for Evolution from an Active Enzyme into Lens-Refractive Protein

(2016) Wei-Hung Tan et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Cyclable Condensation and Hierarchical Assembly of Metastable Reflectin Proteins, the Drivers of Tunable Biophotonics

(2015) Robert Levenson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Visual phototransduction components in cephalopod chromatophores suggest dermal photoreception

(2015) A. C. N. Kingston et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides

(2015) M. D. Ramirez et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Photonic crystals cause active colour change in chameleons

(2015) Jérémie Teyssier et al.   Nature Communications

Virtual Screening of Acetylcholinesterase Inhibitors Using the Lipinski’s Rule of Five and ZINC Databank

(2015) Pablo Andrei Nogara et al.   Biomed Research International

The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing

(2015) Shahar Alon et al.   eLife

Virtual screening with AutoDock Vina and the common pharmacophore engine of a low diversity library of fragments and hits against the three allosteric sites of HIV integrase: participation in the SAMPL4 protein–ligand binding challenge

(2014) Alexander L. Perryman et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Coloration principles of nymphaline butterflies - thin films, melanin, ommochromes and wing scale stacking

(2014) D. G. Stavenga et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Experimental determination of refractive index of condensed reflectin in squid iridocytes

(2014) A. Ghoshal et al.   Journal of the Royal Society Interface

The structure-function relationships of a natural nanoscale photonic device in cuttlefish chromatophores

(2014) L. F. Deravi et al.   Journal of the Royal Society Interface

PNAS Plus: From the Cover: Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid

(2014) M. S. Pankey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the optimal trimming of high-throughput mRNA sequence data

(2014) Matthew D. MacManes   Frontiers in Genetics

Bright White Scattering from Protein Spheres in Color Changing, Flexible Cuttlefish Skin

(2013) Lydia M. Mäthger et al.   ADVANCED FUNCTIONAL MATERIALS

Precise colocalization of interacting structural and pigmentary elements generates extensive color pattern variation in Phelsuma lizards

(2013) Suzanne V Saenko et al.   BMC BIOLOGY

Reflectin genes and development of iridophore patterns inSepia officinalisembryos (Mollusca, Cephalopoda)

(2013) Aude Andouche et al.   DEVELOPMENTAL DYNAMICS

Chromatophore radial muscle fibers anchor in flexible squid skin

(2013) George R.R. Bell et al.   INVERTEBRATE BIOLOGY

Improving transcriptome assembly through error correction of high-throughput sequence reads

(2013) Matthew D. MacManes et al.   PeerJ

Transcription Factor Binding to a DNA Zip Code Controls Interchromosomal Clustering at the Nuclear Periphery

(2012) Donna Garvey Brickner et al.   DEVELOPMENTAL CELL

Recombinant reflectin-based optical materials

(2012) Guokui Qin et al.   JOURNAL OF POLYMER SCIENCE PART B-POLYMER PHYSICS

Cross-docking study on InhA inhibitors: a combination of Autodock Vina and PM6-DH2 simulations to retrieve bio-active conformations

(2012) Jean-Luc Stigliani et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

The use of background matching vs. masquerade for camouflage in cuttlefish Sepia officinalis

(2011) Kendra C. Buresch et al.   VISION RESEARCH

Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli

(2010) Y. Takatsuka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Do cephalopods communicate using polarized light reflections from their skin?

(2009) L. M. Mathger et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Data Processing Algorithms for Analysis of High Resolution MSMS Spectra of Peptides with Complex Patterns of Posttranslational Modifications

(2009) Shenheng Guan et al.   MOLECULAR & CELLULAR PROTEOMICS

Color matching on natural substrates in cuttlefish, Sepia officinalis

(2008) Lydia M. Mäthger et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY A-NEUROETHOLOGY SENSORY NEURAL AND BEHAVIORAL PHYSIOLOGY

Mechanisms and behavioural functions of structural coloration in cephalopods

(2008) L. M Mathger et al.   Journal of the Royal Society Interface

Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics

(2008) Hyungwon Choi et al.   MOLECULAR & CELLULAR PROTEOMICS