DVID: Distributed Versioned Image-Oriented Dataservice

Progress and remaining challenges in high-throughput volume electron microscopy

(2018) Jörgen Kornfeld et al.   CURRENT OPINION IN NEUROBIOLOGY

High-precision automated reconstruction of neurons with flood-filling networks

(2018) Michał Januszewski et al.   NATURE METHODS

NeuTu: Software for Collaborative, Large-Scale, Segmentation-Based Connectome Reconstruction

(2018) Ting Zhao et al.   Frontiers in Neural Circuits

A connectome of a learning and memory center in the adult Drosophila brain

(2017) Shin-ya Takemura et al.   eLife

NeuroBlocks – Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects

(2016) Ali K. Ai-Awami et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

A Quick Introduction to Version Control with Git and GitHub

(2016) John D. Blischak et al.   PLoS Computational Biology

BigDataViewer: visualization and processing for large image data sets

(2015) Tobias Pietzsch et al.   NATURE METHODS

Synaptic circuits and their variations within different columns in the visual system ofDrosophila

(2015) Shin-ya Takemura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Context-Aware Delayed Agglomeration Framework for Electron Microscopy Segmentation

(2015) Toufiq Parag et al.   PLoS One

The big data challenges of connectomics

(2014) Jeff W Lichtman et al.   NATURE NEUROSCIENCE

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages

(2014) Juan Nunez-Iglesias et al.   Frontiers in Neuroinformatics

CATMAID: collaborative annotation toolkit for massive amounts of image data

(2009) S. Saalfeld et al.   BIOINFORMATICS

The pathologies of big data

(2009) Adam Jacobs   COMMUNICATIONS OF THE ACM