NeuTu: Software for Collaborative, Large-Scale, Segmentation-Based Connectome Reconstruction

High-precision automated reconstruction of neurons with flood-filling networks

(2018) Michał Januszewski et al.   NATURE METHODS

Simple integration of fast excitation and offset, delayed inhibition computes directional selectivity in Drosophila

(2018) Eyal Gruntman et al.   NATURE NEUROSCIENCE

VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks

(2018) Daniel R. Berger et al.   Frontiers in Neural Circuits

webKnossos: efficient online 3D data annotation for connectomics

(2017) Kevin M Boergens et al.   NATURE METHODS

Multicut brings automated neurite segmentation closer to human performance

(2017) Thorsten Beier et al.   NATURE METHODS

Enhanced FIB-SEM systems for large-volume 3D imaging

(2017) C Shan Xu et al.   eLife

The comprehensive connectome of a neural substrate for ‘ON’ motion detection in Drosophila

(2017) Shin-ya Takemura et al.   eLife

A connectome of a learning and memory center in the adult Drosophila brain

(2017) Shin-ya Takemura et al.   eLife

The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus

(2016) Josh Lyskowski Morgan et al.   CELL

Anatomy and function of an excitatory network in the visual cortex

(2016) Wei-Chung Allen Lee et al.   NATURE

Dense EM-based reconstruction of the interglomerular projectome in the zebrafish olfactory bulb

(2016) Adrian A Wanner et al.   NATURE NEUROSCIENCE

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

High-resolution, high-throughput imaging with a multibeam scanning electron microscope

(2015) A.L. EBERLE et al.   JOURNAL OF MICROSCOPY

Ultrastructurally smooth thick partitioning and volume stitching for large-scale connectomics

(2015) Kenneth J Hayworth et al.   NATURE METHODS

Synaptic circuits and their variations within different columns in the visual system ofDrosophila

(2015) Shin-ya Takemura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward large-scale connectome reconstructions

(2014) Stephen M Plaza et al.   CURRENT OPINION IN NEUROBIOLOGY

Design and Evaluation of Interactive Proofreading Tools for Connectomics

(2014) Daniel Haehn et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

A visual motion detection circuit suggested by Drosophila connectomics

(2013) Shin-ya Takemura et al.   NATURE

Volume electron microscopy for neuronal circuit reconstruction

(2011) Kevin L Briggman et al.   CURRENT OPINION IN NEUROBIOLOGY

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

Wiring specificity in the direction-selectivity circuit of the retina

(2011) Kevin L. Briggman et al.   NATURE

CATMAID: collaborative annotation toolkit for massive amounts of image data

(2009) S. Saalfeld et al.   BIOINFORMATICS