Fine mapping of the major QTL for seed coat color in Brassica rapa var. Yellow Sarson by use of NIL populations and transcriptome sequencing for identification of the candidate genes

Genome-Wide Association Mapping of Seed Coat Color in Brassica napus

(2017) Jia Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Characterization of the BrTT1 gene responsible for seed coat color formation in Dahuang (Brassica rapa L. landrace)

(2017) Yanhua Wang et al.   MOLECULAR BREEDING

Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus

(2017) Jianping Lian et al.   PLANT SCIENCE

Transcriptomic Analysis of Seed Coats in Yellow-Seeded Brassica napus Reveals Novel Genes That Influence Proanthocyanidin Biosynthesis

(2017) Meiyan Hong et al.   Frontiers in Plant Science

Characteristics of Color Development in Seeds of Brown- and Yellow-Seeded Heading Chinese Cabbage and Molecular Analysis of Brsc, the Candidate Gene Controlling Seed Coat Color

(2017) Yanjing Ren et al.   Frontiers in Plant Science

Identification of SSR markers closely linked to the yellow seed coat color gene in heading Chinese cabbage (Brassica rapaL. ssp.pekinensis)

(2017) Yanjing Ren et al.   Biology Open

RNAseq analysis reveals pathways and candidate genes associated with salinity tolerance in a spaceflight-induced wheat mutant

(2017) Hongchun Xiong et al.   Scientific Reports

Genome-wide identification of SSR markers in the Brassica A genome and their utility in breeding

(2016) Neil Hobson et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Candidate gene prediction for a petal degeneration mutant, pdm, of the Chinese cabbage (Brassica campestris ssp. pekinensis) by using fine mapping and transcriptome analysis

(2016) Shengnan Huang et al.   MOLECULAR BREEDING

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

Emerging Roles of RNA-Binding Proteins in Plant Growth, Development, and Stress Responses

(2016)   MOLECULES AND CELLS

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Three zinc-finger RNA-binding proteins in cabbage (Brassica rapa) play diverse roles in seed germination and plant growth under normal and abiotic stress conditions

(2016) Ye Rin Park et al.   PHYSIOLOGIA PLANTARUM

Fine Mapping and Whole-Genome Resequencing Identify the Seed Coat Color Gene in Brassica rapa

(2016) Yanhua Wang et al.   PLoS One

Embryonal Control of Yellow Seed Coat Locus ECY1 Is Related to Alanine and Phenylalanine Metabolism in the Seed Embryo of Brassica napus

(2016) Fulin Wang et al.   G3-Genes Genomes Genetics

Transcriptome Analysis of Brassica rapa Near-Isogenic Lines Carrying Clubroot-Resistant and –Susceptible Alleles in Response to Plasmodiophora brassicae during Early Infection

(2016) Jingjing Chen et al.   Frontiers in Plant Science

Identification of QTL for seed coat colour and oil content in Brassica napus by association mapping using SSR markers

(2015) Cunmin Qu et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Metabolic Characteristics in Meal of Black Rapeseed and Yellow-Seeded Progeny of Brassica napus–Sinapis alba Hybrids

(2015) Jinjin Jiang et al.   MOLECULES

Transcriptome Analysis Comparison of Lipid Biosynthesis in the Leaves and Developing Seeds of Brassica napus

(2015) Jie Chen et al.   PLoS One

Comparative Transcriptome Analysis of Recessive Male Sterility (RGMS) in Sterile and Fertile Brassica napus Lines

(2015) Cunmin Qu et al.   PLoS One

Genetic Study and QTL Mapping of Seed Glucosinolate Content in L.

(2014) Habibur Rahman et al.   CROP SCIENCE

Upregulation of the AT-hook DNA binding gene BoMF2 in OguCMS anthers of Brassica oleracea suggests that it encodes a transcriptional regulatory factor for anther development

(2014) Jungen Kang et al.   MOLECULAR BIOLOGY REPORTS

Quantitative trait loci mapping of seed colour, hairy leaf, seedling anthocyanin, leaf chlorosis and days to flowering in F2population ofBrassica rapaL.

(2014) Mukhlesur Rahman et al.   PLANT BREEDING

Quantitative trait loci (QTL) mapping of silique length and petal colour inBrassica rapa

(2014) Berisso Kebede et al.   PLANT BREEDING

Update on transparent testa mutants from Arabidopsis thaliana: characterisation of new alleles from an isogenic collection

(2014) Ingo Appelhagen et al.   PLANTA

Differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded Brassica napus

(2013) Cunmin Qu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of flavonoid biosynthesis involves an unexpected complex transcriptional regulation ofTT8expression, in Arabidopsis

(2013) Wenjia Xu et al.   NEW PHYTOLOGIST

Dissection of a major QTL for seed colour and fibre content inBrassica napusreveals colocalization with candidate genes for phenylpropanoid biosynthesis and flavonoid deposition

(2013) Anna Stein et al.   PLANT BREEDING

De Novo Transcriptome of Brassica juncea Seed Coat and Identification of Genes for the Biosynthesis of Flavonoids

(2013) Xianjun Liu et al.   PLoS One

Identification of seed-related QTL in Brassica rapa

(2013) H. Bagheri et al.   SPANISH JOURNAL OF AGRICULTURAL RESEARCH

Natural mutations in two homoeologous TT8 genes control yellow seed coat trait in allotetraploid Brassica juncea (AABB)

(2013) Lakshmi K. Padmaja et al.   THEORETICAL AND APPLIED GENETICS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Construction of genetic linkage map and mapping of QTL for seed color in Brassica rapa

(2012) Berisso Kebede et al.   GENOME

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

A Large Insertion in bHLH Transcription Factor BrTT8 Resulting in Yellow Seed Coat in Brassica rapa

(2012) Xia Li et al.   PLoS One

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds

(2011) Ingo Appelhagen et al.   PLANT JOURNAL

Genetic characterization and fine mapping of a yellow-seeded gene in Dahuang (a Brassica rapa landrace)

(2011) Lu Xiao et al.   THEORETICAL AND APPLIED GENETICS

RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression

(2010) E. Lalonde et al.   GENOME RESEARCH

A Detailed Survey of Seed Coat Flavonoids in Developing Seeds ofBrassica napusL.

(2010) Bathilde Auger et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Identification of two major QTL for yellow seed color in two crosses of resynthesized Brassica napus line No. 2127-17

(2010) Yan Zhang et al.   MOLECULAR BREEDING

Inheritance of seed coat color genes in Brassica napus (L.) and tagging the genes using SRAP, SCAR and SNP molecular markers

(2010) Mukhlesur Rahman et al.   MOLECULAR BREEDING

Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.)

(2010) Awadhesh Pandit et al.   MOLECULAR GENETICS AND GENOMICS

Physiological and developmental regulation of seed oil production

(2010) Sébastien Baud et al.   PROGRESS IN LIPID RESEARCH

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Breeding for improved oil and meal quality in rape (Brassica napus L.) and turnip rape (Brassica campestris L.)

(2009) ROLAND JÖNSSON   HEREDITAS

Resynthesized Brassica napus L.: A review of its potential in breeding and genetic analysis

(2008) BAO-YUAN CHEN et al.   HEREDITAS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Map-based cloning and characterization of a gene controlling hairiness and seed coat color traits in Brassica rapa

(2008) Jiefu Zhang et al.   PLANT MOLECULAR BIOLOGY