Comparative sequence and methylation analysis of chloroplast and amyloplast genomes from rice

Chloroplast structure and DNA methylation polymorphisms in an albino mutant of wheat (Triticum aestivum) cv. Xinong 1376

(2018) Yulong Song et al.   Crop & Pasture Science

Plant mitochondrial DNA

(2017) Brent L Nielsen   Frontiers in Bioscience-Landmark

Genome-wide identification of DNA methylation provides insights into the association of gene expression in rice exposed to pesticide atrazine

(2016) Yi Chen Lu et al.   Scientific Reports

Organellar genome copy number variation and integrity during moderate maturation of roots and leaves of maize seedlings

(2015) Jin Ma et al.   CURRENT GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation

(2014) S. R. Eichten et al.   PLANT PHYSIOLOGY

Complex Interplay among DNA Modification, Noncoding RNA Expression and Protein-Coding RNA Expression in Salvia miltiorrhiza Chloroplast Genome

(2014) Haimei Chen et al.   PLoS One

Unbiased estimation of chloroplast number in mesophyll cells: advantage of a genuine three-dimensional approach

(2013) Zuzana Kubínová et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biogenesis and homeostasis of chloroplasts and other plastids

(2013) Paul Jarvis et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

(2012) Chang Liu et al.   BMC GENOMICS

DNA methylation and genome rearrangement characteristics of phase change in cultured shoots of Sequoia sempervirens

(2012) Li-Chun Huang et al.   PHYSIOLOGIA PLANTARUM

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Fewer genes than organelles: extremely low and variable gene copy numbers in mitochondria of somatic plant cells

(2010) Tobias Preuten et al.   PLANT JOURNAL

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

High efficiency plastid transformation in potato and regulation of transgene expression in leaves and tubers by alternative 5′ and 3′ regulatory sequences

(2010) Vladimir T. Valkov et al.   TRANSGENIC RESEARCH

Insensitivity of chloroplast gene expression to DNA methylation

(2009) Daniela Ahlert et al.   MOLECULAR GENETICS AND GENOMICS

Genome-Wide Analysis of Plastid Gene Expression in Potato Leaf Chloroplasts and Tuber Amyloplasts: Transcriptional and Posttranscriptional Control

(2009) V. T. Valkov et al.   PLANT PHYSIOLOGY