Complex Interplay among DNA Modification, Noncoding RNA Expression and Protein-Coding RNA Expression in Salvia miltiorrhiza Chloroplast Genome

Conserved expression of natural antisense transcripts in mammals

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The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

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A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods

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A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

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The Epigenome and Plant Development

(2011) Guangming He et al.   Annual Review of Plant Biology

De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients

(2011) Hua Wenping et al.   GENOMICS

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

(2011) Tyson A. Clark et al.   NUCLEIC ACIDS RESEARCH

Characterization of plastid psb T sense and antisense RNAs

(2011) Ouafa Zghidi-Abouzid et al.   NUCLEIC ACIDS RESEARCH

Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA

(2011) R. E. Sharwood et al.   RNA

Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome

(2011) Amber M. Hotto et al.   G3-Genes Genomes Genetics

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Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth

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Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer

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Strand-specific real-time RT-PCR for distinguishing influenza vRNA, cRNA, and mRNA

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Alternative expression analysis by RNA sequencing

(2010) Malachi Griffith et al.   NATURE METHODS

Direct detection of DNA methylation during single-molecule, real-time sequencing

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A long antisense RNA in plant chloroplasts

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The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

(2010) Meng Yang et al.   PLoS One

Tablet--next generation sequence assembly visualization

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Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects

(2009) Francis Repoila et al.   BIOLOGY OF THE CELL

Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

(2009) Anita Grigoriadis et al.   BMC GENOMICS

Insensitivity of chloroplast gene expression to DNA methylation

(2009) Daniela Ahlert et al.   MOLECULAR GENETICS AND GENOMICS

Regulatory roles of natural antisense transcripts

(2009) Mohammad Ali Faghihi et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses

(2008) B. Ben Amor et al.   GENOME RESEARCH

Advancement in analysis of Salviae miltiorrhizae Radix et Rhizoma (Danshen)

(2008) Yong-Guo Li et al.   JOURNAL OF CHROMATOGRAPHY A

Coordination of gene expression between organellar and nuclear genomes

(2008) Jesse D. Woodson et al.   NATURE REVIEWS GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS