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Title
Using long-read sequencing to detect imprinted DNA methylation
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-02-18
DOI
10.1093/nar/gkz107
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- (2017) Arthur C Rand et al. NATURE METHODS
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- (2017) Daniel Andergassen et al. eLife
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- Mouse genomic variation and its effect on phenotypes and gene regulation
- (2011) Thomas M. Keane et al. NATURE
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