Looking Beyond Respiratory Cultures: Microbiome-Cytokine Signatures of Bacterial Pneumonia and Tracheobronchitis in Lung Transplant Recipients

Staphylococcus via an Interaction With the ELR+ CXC Chemokine ENA-78 Is Associated With BOS

(2015) A. L. Gregson et al.   AMERICAN JOURNAL OF TRANSPLANTATION

A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses

(2015) Jyoti Shankar et al.   BMC BIOINFORMATICS

Bayesian estimation of a cancer population by capture-recapture with individual capture heterogeneity and small sample

(2015) Laurent Bailly et al.   BMC Medical Research Methodology

Understanding the Concept of Health Care-Associated Pneumonia in Lung Transplant Recipients

(2015) Federico Palacio et al.   CHEST

The bacterial microbiota in inflammatory lung diseases

(2015) Gary B. Huffnagle et al.   CLINICAL IMMUNOLOGY

The influence of the microbiota on the immune response to transplantation

(2015) Caroline Bartman et al.   Current Opinion in Organ Transplantation

Antibiotic therapy for ventilator-associated tracheobronchitis

(2015) Donald E. Craven et al.   CURRENT OPINION IN PULMONARY MEDICINE

Chronic obstructive pulmonary disease and asthma-associated Proteobacteria, but not commensalPrevotellaspp., promote Toll-like receptor 2-independent lung inflammation and pathology

(2015) Jeppe M. Larsen et al.   IMMUNOLOGY

Microbiota—implications for immunity and transplantation

(2015) Jonathan S. Bromberg et al.   Nature Reviews Nephrology

Phase I trial design for drug combinations with Bayesian model averaging

(2015) Ick Hoon Jin et al.   PHARMACEUTICAL STATISTICS

Clinical Outcome of Patients Transplanted with Marginal Donor Lungs via Ex Vivo Lung Perfusion Compared to Standard Lung Transplantation

(2015) James E. Fildes et al.   TRANSPLANTATION

Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract

(2015) Jyoti Shankar et al.   Scientific Reports

Loss of GD1-positive Lactobacillus correlates with inflammation in human lungs with COPD

(2015) M. A. Sze et al.   BMJ Open

Granulocyte-Macrophage Colony Stimulatory Factor Enhances the Pro-Inflammatory Response of Interferon-γ-Treated Macrophages to Pseudomonas aeruginosa Infection

(2015) Sonali Singh et al.   PLoS One

The Microbiota, the Immune System and the Allograft

(2014) M.-L. Alegre et al.   AMERICAN JOURNAL OF TRANSPLANTATION

Antibiotic treatment of ventilator-associated tracheobronchitis

(2014) Donald E. Craven et al.   Current Opinion in Critical Care

Ventilator-associated respiratory infection following lung transplantation

(2014) Jordi Riera et al.   EUROPEAN RESPIRATORY JOURNAL

Directing traffic: IL-17 and IL-22 coordinate pulmonary immune defense

(2014) Jeremy P. McAleer et al.   IMMUNOLOGICAL REVIEWS

Analysis of Culture-Dependent versus Culture-Independent Techniques for Identification of Bacteria in Clinically Obtained Bronchoalveolar Lavage Fluid

(2014) R. P. Dickson et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The role of the microbiome in exacerbations of chronic lung diseases

(2014) Robert P Dickson et al.   LANCET

Ultra-low Dose Interleukin-2 Promotes Immune-modulating Function of Regulatory T Cells and Natural Killer Cells in Healthy Volunteers

(2014) Sawa Ito et al.   MOLECULAR THERAPY

Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations

(2014) Robert P. Dickson et al.   PLoS One

The Lung Microbiome of Ugandan HIV-Infected Pneumonia Patients Is Compositionally and Functionally Distinct from That of San Franciscan Patients

(2014) Shoko Iwai et al.   PLoS One

Mycoplasma gallisepticum Lipid Associated Membrane Proteins Up-regulate Inflammatory Genes in Chicken Tracheal Epithelial Cells via TLR-2 Ligation through an NF-κB Dependent Pathway

(2014) Sanjukta Majumder et al.   PLoS One

Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non-C. difficile-Associated Diarrhea from Healthy Controls

(2014) A. M. Schubert et al.   mBio

Respiratory infections in patients undergoing mechanical ventilation

(2014) Jordi Rello et al.   Lancet Respiratory Medicine

Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis

(2014) Robert P Dickson et al.   Lancet Respiratory Medicine

Reestablishment of Recipient-associated Microbiota in the Lung Allograft Is Linked to Reduced Risk of Bronchiolitis Obliterans Syndrome

(2013) Dana L. Willner et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Longitudinal Holistic Profiling of the Lung Transplant Microbiome

(2013) D. Willner et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

(2013) Koji Atarashi et al.   NATURE

Microbes and Allogeneic Transplantation

(2013) Maria-Luisa Alegre et al.   TRANSPLANTATION

Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise

(2013) Homer L Twigg et al.   Lancet Respiratory Medicine

Regulation of Interferon Gamma Signaling by Suppressors of Cytokine Signaling and Regulatory T Cells

(2013) Joseph Larkin et al.   Frontiers in Immunology

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

(2013) Leopoldo N Segal et al.   Microbiome

Lung-enriched Organisms and Aberrant Bacterial and Fungal Respiratory Microbiota after Lung Transplant

(2012) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Longitudinal analysis of the lung microbiome in lung transplantation

(2012) Klaudyna Borewicz et al.   FEMS MICROBIOLOGY LETTERS

Staphylococcus aureus infections in the early period after lung transplantation: Epidemiology, risk factors, and outcomes

(2012) Ryan K. Shields et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

Divergent Pro-Inflammatory Profile of Human Dendritic Cells in Response to Commensal and Pathogenic Bacteria Associated with the Airway Microbiota

(2012) Jeppe Madura Larsen et al.   PLoS One

Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota

(2012) A. F. Goddard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lung transplant infection

(2012) SERGIO R. BURGUETE et al.   RESPIROLOGY

Sinus Microbiome Diversity Depletion and Corynebacterium tuberculostearicum Enrichment Mediates Rhinosinusitis

(2012) N. A. Abreu et al.   Science Translational Medicine

Intubated patients developing tracheobronchitis or pneumonia have distinctive complement system gene expression signatures in the pre-infection period: A pilot study

(2012) I. Martin-Loeches et al.   Medicina Intensiva

Ventilator-Associated Tracheobronchitis

(2011) Richard G. Wunderink   CHEST

A 2010 working formulation for the standardization of definitions of infections in cardiothoracic transplant recipients

(2011) Shahid Husain et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

Treatment with IP-10 induces host-protective immune response by regulating the T regulatory cell functioning in Leishmania donovani-infected mice

(2011) Gaurav Gupta et al.   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

The Toll-Like Receptor 2 Pathway Establishes Colonization by a Commensal of the Human Microbiota

(2011) J. L. Round et al.   SCIENCE

Ventilator-Associated Tracheobronchitis in a Mixed Surgical and Medical ICU Population

(2010) John Dallas et al.   CHEST

Hospital‐Acquired Pneumonia, Health Care–Associated Pneumonia, Ventilator‐Associated Pneumonia, and Ventilator‐Associated Tracheobronchitis: Definitions and Challenges in Trial Design

(2010) Michael S. Niederman   CLINICAL INFECTIOUS DISEASES

Ventilator‐Associated Tracheobronchitis and Pneumonia: Thinking Outside the Box

(2010) Donald E. Craven et al.   CLINICAL INFECTIOUS DISEASES

Phylogenetic diversity measures based on Hill numbers

(2010) A. Chao et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Frequency, prevention, outcome and treatment of ventilator-associated tracheobronchitis: Systematic review and meta-analysis

(2010) Michalis Agrafiotis et al.   RESPIRATORY MEDICINE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bayesian model averaging for harmful algal bloom prediction

(2009) Grant Hamilton et al.   ECOLOGICAL APPLICATIONS

IFN-γ-STAT1 signal regulates the differentiation of inducible Treg: Potential role for ROS-mediated apoptosis

(2009) Jae-Hoon Chang et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Bayesian statistical methods for genetic association studies

(2009) Matthew Stephens et al.   NATURE REVIEWS GENETICS

Clinical spectrum of gram-positive infections in lung transplantation

(2009) M.R. Gupta et al.   Transplant Infectious Disease

Ventilator-Associated Tracheobronchitis

(2008) Donald E. Craven et al.   CHEST

Bayesian variable and model selection methods for genetic association studies

(2008) Brooke L. Fridley   GENETIC EPIDEMIOLOGY

Infections in Lung Allograft Recipients: Ganciclovir Era

(2008) Vincent G. Valentine et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION