Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract

Variable selection in regression with compositional covariates

(2014) W. Lin et al.   BIOMETRIKA

Candida albicanscolonization and dissemination from the murine gastrointestinal tract: the influence of morphology and Th17 immunity

(2014) Simon Vautier et al.   CELLULAR MICROBIOLOGY

Microbial Learning Lessons: SFB Educate the Immune System

(2014) Yun Kyung Lee et al.   IMMUNITY

Segmented Filamentous Bacterium Uses Secondary and Tertiary Lymphoid Tissues to Induce Gut IgA and Specific T Helper 17 Cell Responses

(2014) Emelyne Lécuyer et al.   IMMUNITY

Segmented Filamentous Bacteria Antigens Presented by Intestinal Dendritic Cells Drive Mucosal Th17 Cell Differentiation

(2014) Yoshiyuki Goto et al.   IMMUNITY

Innocent until proven guilty: mechanisms and roles ofStreptococcus-Candidainteractions in oral health and disease

(2014) H. Xu et al.   Molecular Oral Microbiology

Preclinical research: Make mouse studies work

(2014) Steve Perrin   NATURE

Focused specificity of intestinal TH17 cells towards commensal bacterial antigens

(2014) Yi Yang et al.   NATURE

Functional divergence in gastrointestinal microbiota in physically-separated genetically identical mice

(2014) G. B. Rogers et al.   Scientific Reports

Fungal-bacterial interactions and their relevance to oral health: linking the clinic and the bench

(2014) Patricia I. Diaz et al.   Frontiers in Cellular and Infection Microbiology

Evaluation of Efficacy of Probiotics in Prevention of Candida Colonization in a PICU—A Randomized Controlled Trial*

(2013) Suresh Kumar et al.   CRITICAL CARE MEDICINE

Murine Models of Candida Gastrointestinal Colonization and Dissemination

(2013) Andrew Y. Koh   EUKARYOTIC CELL

Nosocomial bloodstream infections due to Candida spp. in the USA: species distribution, clinical features and antifungal susceptibilities

(2013) Hilmar Wisplinghoff et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment

(2013) Serena Dollive et al.   PLoS One

Bacterial Community Mapping of the Mouse Gastrointestinal Tract

(2013) Shenghua Gu et al.   PLoS One

Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans

(2013) John R. Erb Downward et al.   Scientific Reports

Intestinal Commensal Microbes as Immune Modulators

(2012) Ivaylo I. Ivanov et al.   Cell Host & Microbe

Inborn errors of human IL-17 immunity underlie chronic mucocutaneous candidiasis

(2012) Anne Puel et al.   Current Opinion in Allergy and Clinical Immunology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis

(2012) I. D. Iliev et al.   SCIENCE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Interplay between the Gastric Bacterial Microbiota and Candida albicans during Postantibiotic Recolonization and Gastritis

(2011) Katie L. Mason et al.   INFECTION AND IMMUNITY

Immunomodulatory and protective effect of probiotic Lactobacillus casei against Candida albicans infection in malnourished mice

(2011) Julio Villena et al.   MICROBIOLOGY AND IMMUNOLOGY

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

(2011) M. B. Arnaud et al.   NUCLEIC ACIDS RESEARCH

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

(2010) Gary D Wu et al.   BMC MICROBIOLOGY

Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon

(2010) M. C. Rea et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

Immunomodulatory Properties of Antibiotics

(2010) R. Nau et al.   Current Molecular Pharmacology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

(2009) Ivaylo I. Ivanov et al.   CELL

Data augmentation, frequentist estimation, and the Bayesian analysis of multinomial logit models

(2009) Steven L. Scott   STATISTICAL PAPERS

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Mucosal Damage and Neutropenia Are Required for Candida albicans Dissemination

(2008) Andrew Y. Koh et al.   PLoS Pathogens