Forfeiting the priority effect: turnover defines biofilm community succession

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

(2018) James C. Stegen et al.   Nature Communications

Interspecific Plant Interactions Reflected in Soil Bacterial Community Structure and Nitrogen Cycling in Primary Succession

(2018) Joseph E. Knelman et al.   Frontiers in Microbiology

Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes

(2018) Christina Bock et al.   Frontiers in Microbiology

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

(2017) Emily B. Graham et al.   ENVIRONMENTAL MICROBIOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Nutrient limitation of soil microbial activity during the earliest stages of ecosystem development

(2017) Sarah C. Castle et al.   OECOLOGIA

A bacterial pioneer produces cellulase complexes that persist through community succession

(2017) Sebastian Kolinko et al.   Nature Microbiology

Ecological strategies and metabolic trade-offs of complex environmental biofilms

(2017) Robert Niederdorfer et al.   npj Biofilms and Microbiomes

Geo- and biogeochemical processes in a heliothermal hypersaline lake

(2016) John M. Zachara et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Trade-offs between microbiome diversity and productivity in a stratified microbial mat

(2016) Hans C Bernstein et al.   ISME Journal

Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

(2016) Jacob P. Beam et al.   Frontiers in Microbiology

Attached biofilms and suspended aggregates are distinct microbial lifestyles emanating from differing hydraulics

(2016) Robert Niederdorfer et al.   Nature Microbiology

An Imaging Mass Spectrometry Study on the Formation of Conditioning Films and Biofilms in the Subsurface (Äspö Hard Rock Laboratory, SE Sweden)

(2015) Tim Leefmann et al.   GEOMICROBIOLOGY JOURNAL

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatially tracking 13 C-labelled substrate (bicarbonate) accumulation in microbial communities using laser ablation isotope ratio mass spectrometry

(2014) James J. Moran et al.   Environmental Microbiology Reports

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

(2014) Jessica K. Cole et al.   Frontiers in Microbiology

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling

(2013) Stephen R. Lindemann et al.   Frontiers in Microbiology

The relationship between species replacement, dissimilarity derived from nestedness, and nestedness

(2012) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

betapart: an R package for the study of beta diversity

(2012) Andrés Baselga et al.   Methods in Ecology and Evolution

Biodiversity, abundance, and activity of nitrogen-fixing bacteria during primary succession on a copper mine tailings

(2011) Li-Nan Huang et al.   FEMS MICROBIOLOGY ECOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

(2011) Jack A. Gilbert et al.   Standards in Genomic Sciences

Assembly history dictates ecosystem functioning: evidence from wood decomposer communities

(2010) Tadashi Fukami et al.   ECOLOGY LETTERS

Abundances and potential activities of nitrogen cycling microbial communities along a chronosequence of a glacier forefield

(2010) Robert Brankatschk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets

(2010) Angélique Gobet et al.   NUCLEIC ACIDS RESEARCH

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Is the distribution of nitrogen-fixing cyanobacteria in the oceans related to temperature?

(2009) Lucas J. Stal   ENVIRONMENTAL MICROBIOLOGY

Partitioning the turnover and nestedness components of beta diversity

(2009) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

(2009) Anders F Andersson et al.   ISME Journal

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

High Diversity of Diazotrophs in the Forefield of a Receding Alpine Glacier

(2008) Laurence Duc et al.   MICROBIAL ECOLOGY

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA