Carbon fixation and energy metabolisms of a subseafloor olivine biofilm

Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community

(2017) Lily Momper et al.   ISME Journal

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

(2017) Sean P. Jungbluth et al.   PeerJ

Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids

(2017) Sean P. Jungbluth et al.   Scientific Data

Subseafloor microbial communities in hydrogen-rich vent fluids from hydrothermal systems along the Mid-Cayman Rise

(2016) Julie Reveillaud et al.   ENVIRONMENTAL MICROBIOLOGY

Methanogenesis and the Wood–Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association

(2016) Guillaume Borrel et al.   Genome Biology and Evolution

Deep Crustal Communities of the Juan de Fuca Ridge Are Governed by Mineralogy

(2016) Amy R. Smith et al.   GEOMICROBIOLOGY JOURNAL

Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt

(2016) Sean P Jungbluth et al.   ISME Journal

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Analysis of the Core Genome and Pan-Genome of Autotrophic Acetogenic Bacteria

(2016) Jongoh Shin et al.   Frontiers in Microbiology

[FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation

(2015) John W. Peters et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

A metagenomic window into carbon metabolism at 3 km depth in Precambrian continental crust

(2015) Cara Magnabosco et al.   ISME Journal

Carbon fixation by basalt-hosted microbial communities

(2015) Beth N. Orcutt et al.   Frontiers in Microbiology

Dissolved hydrogen and methane in the oceanic basaltic biosphere

(2014) Huei-Ting Lin et al.   EARTH AND PLANETARY SCIENCE LETTERS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria

(2014) Kai Schuchmann et al.   NATURE REVIEWS MICROBIOLOGY

Olivine alteration and H2 production in carbonate-rich, low temperature aqueous environments

(2014) Anna Neubeck et al.   PLANETARY AND SPACE SCIENCE

Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction

(2014) Cedric C. Laczny et al.   Scientific Reports

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Hydrogen generation from low-temperature water–rock reactions

(2013) L. E. Mayhew et al.   Nature Geoscience

Beating the acetyl coenzyme A-pathway to the origin of life

(2013) W. Nitschke et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt

(2013) M. A. Lever et al.   SCIENCE

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

(2012) Katrina J. Edwards et al.   Annual Review of Earth and Planetary Sciences

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Energy yields from chemolithotrophic metabolisms in igneous basement of the Juan de Fuca ridge flank system

(2012) Jason Boettger et al.   CHEMICAL GEOLOGY

Inorganic chemistry, gas compositions and dissolved organic carbon in fluids from sedimented young basaltic crust on the Juan de Fuca Ridge flanks

(2012) Huei-Ting Lin et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank

(2012) Sean P Jungbluth et al.   ISME Journal

A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem

(2012) Hideto Takami et al.   PLoS One

The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences

(2012) Kaustubh Raosaheb Patil et al.   PLoS One

The Emergence and Early Evolution of Biological Carbon-Fixation

(2012) Rogier Braakman et al.   PLoS Computational Biology

Metagenomic Evidence for H2 Oxidation and H2 Production by Serpentinite-Hosted Subsurface Microbial Communities

(2012) William J. Brazelton et al.   Frontiers in Microbiology

Ecological Aspects of the Distribution of Different Autotrophic CO2Fixation Pathways

(2011) Ivan A. Berg   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Efficient de novo assembly of large genomes using compressed data structures

(2011) J. T. Simpson et al.   GENOME RESEARCH

In situ enrichment of ocean crust microbes on igneous minerals and glasses using an osmotic flow-through device

(2011) Amy Smith et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?

(2010) Georg Fuchs   Annual Review of Microbiology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Archaeoglobus sulfaticallidus sp. nov., a thermophilic and facultatively lithoautotrophic sulfate-reducer isolated from black rust exposed to hot ridge flank crustal fluids

(2010) B. O. Steinsbu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Colonization of subsurface microbial observatories deployed in young ocean crust

(2010) Beth N Orcutt et al.   ISME Journal

Chemosynthetic origin of 14C-depleted dissolved organic matter in a ridge-flank hydrothermal system

(2010) Matthew D. McCarthy et al.   Nature Geoscience

Cytochrome c biogenesis: the Ccm system

(2010) Carsten Sanders et al.   TRENDS IN MICROBIOLOGY

Bacterial and Archaeal DNA Extracted from Inoculated Experiments: Implication for the Optimization of DNA Extraction from Deep-Sea Basalts

(2009) Hongmei Wang et al.   GEOMICROBIOLOGY JOURNAL

Geoglobus acetivorans sp. nov., an iron(III)-reducing archaeon from a deep-sea hydrothermal vent

(2009) G. B. Slobodkina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Enzymology of the Wood-Ljungdahl Pathway of Acetogenesis

(2008) Stephen W. Ragsdale   Annals of the New York Academy of Sciences

Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation

(2008) Stephen W. Ragsdale et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)

(2008) Elizabeth Pierce et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth

(2008) D. Chivian et al.   SCIENCE