Genetic diversity and re-classification of coffee (Coffea canephora Pierre ex A. Froehner) from South Western Nigeria through genotyping-by-sequencing-single nucleotide polymorphism analysis

Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee ( Coffea ) and insights into the evolution of caffeine content in its species

(2017) Perla Hamon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico

(2016) Andrea Garavito et al.   BMC PLANT BIOLOGY

Tracking crop varieties using genotyping-by-sequencing markers: a case study using cassava (Manihot esculenta Crantz)

(2015) Ismail Y. Rabbi et al.   BMC GENETICS

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora

(2014) Thierry Leroy et al.   GENETICA

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

A wake-up call with coffee

(2014) D. Zamir   SCIENCE

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Molecular diversity in Coffea canephora germplasm conserved and cultivated in Brazil

(2014) Flávio de França Souza et al.   Crop Breeding and Applied Biotechnology

Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding

(2014) Jiangfeng He et al.   Frontiers in Plant Science

Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites

(2012) Norosoa J. Razafinarivo et al.   ANNALS OF BOTANY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Current genetic differentiation of Coffea canephora Pierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities

(2009) Céline Gomez et al.   BMC EVOLUTIONARY BIOLOGY

Genetic differentiation of wild and cultivated populations: diversity of Coffea canephora Pierre in Uganda

(2009) P. Musoli et al.   GENOME

Development of new genomic microsatellite markers from robusta coffee (Coffea canephora Pierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies

(2008) Prasad Hendre et al.   BMC PLANT BIOLOGY

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE