Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

(2018) Tommi Vatanen et al.   NATURE

Temporal development of the gut microbiome in early childhood from the TEDDY study

(2018) Christopher J. Stewart et al.   NATURE

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome

(2017) Brandon Brooks et al.   Nature Communications

Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants

(2017) Christopher J. Stewart et al.   Frontiers in Microbiology

Low Microbial Diversity and Abnormal Microbial Succession Is Associated with Necrotizing Enterocolitis in Preterm Infants

(2017) Priscila T. Dobbler et al.   Frontiers in Microbiology

Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

(2017) Mohan Pammi et al.   Microbiome

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

(2017) Christopher J. Stewart et al.   Microbiome

Stool bacterial load in preterm infants with necrotising enterocolitis

(2016) Bashir Abdulkadir et al.   EARLY HUMAN DEVELOPMENT

Una destinatio, viae diversae

(2016) Kjersti Aagaard et al.   EMBO REPORTS

Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study

(2016) Barbara B Warner et al.   LANCET

Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome

(2016) Bashir Abdulkadir et al.   Neonatology

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants

(2016) Doyle V. Ward et al.   Cell Reports

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

(2016) Christopher J. Stewart et al.   Microbiome

Intestinal perforation in very preterm neonates: risk factors and outcomes

(2015) J Shah et al.   Journal of Perinatology

Gut bacteria and necrotizing enterocolitis: cause or effect?

(2015) Christopher James Stewart et al.   TRENDS IN MICROBIOLOGY

Preterm gut microbiota and metabolome following discharge from intensive care

(2015) Christopher J. Stewart et al.   Scientific Reports

Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development

(2015) Tali Raveh-Sadka et al.   eLife

Mucosa-Associated Bacterial Diversity in Necrotizing Enterocolitis

(2014) Rachel Brower-Sinning et al.   PLoS One

Bacterial and fungal viability in the preterm gut: NEC and sepsis

(2013) Christopher James Stewart et al.   Archives of Disease in Childhood-Fetal and Neonatal Edition

Mortality associated with laparotomy-confirmed neonatal spontaneous intestinal perforation: A prospective 5-year multicenter analysis

(2013) Jeremy G. Fisher et al.   JOURNAL OF PEDIATRIC SURGERY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Development of the Preterm Gut Microbiome in Twins at Risk of Necrotising Enterocolitis and Sepsis

(2013) Christopher J. Stewart et al.   PLoS One

Intestinal Microbial Ecology and Environmental Factors Affecting Necrotizing Enterocolitis

(2013) Roberto Murgas Torrazza et al.   PLoS One

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants

(2013) Ardythe L Morrow et al.   Microbiome

Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants

(2013) Erika C Claud et al.   Microbiome

The preterm gut microbiota: changes associated with necrotizing enterocolitis and infection

(2012) CJ Stewart et al.   ACTA PAEDIATRICA

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Investigation of the early intestinal microflora in premature infants with/without necrotizing enterocolitis using two different methods

(2012) Birgitte Smith et al.   PEDIATRIC RESEARCH

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Community analysis of bacteria colonizing intestinal tissue of neonates with necrotizing enterocolitis

(2011) Birgitte Smith et al.   BMC MICROBIOLOGY

Absence of Gastrointestinal Pathogens in Ileum Tissue Resected for Necrotizing Enterocolitis

(2011) Tim Ullrich et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis

(2009) Yunwei Wang et al.   ISME Journal