Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

Detection of Sepsis in Preterm Infants by Fecal Volatile Organic Compounds Analysis

(2017) Daniel J.C. Berkhout et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants

(2017) Christopher J. Stewart et al.   Frontiers in Microbiology

Metabolomics in necrotizing enterocolitis: the state of the art

(2016) Angelica Dessì et al.   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

Functional changes in gut microbiota during hematopoietic stem cell transplantation for severe combined immunodeficiency

(2016) Jonathan P. Lane et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Dietary Casein and Soy Protein Isolate Modulate the Effects of Raffinose and Fructooligosaccharides on the Composition and Fermentation of Gut Microbiota in Rats

(2016) Gaowa Bai et al.   JOURNAL OF FOOD SCIENCE

Bifidobacterium breve BBG-001 in very preterm infants: a randomised controlled phase 3 trial

(2016) Kate Costeloe et al.   LANCET

Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome

(2016) Bashir Abdulkadir et al.   Neonatology

Protective Effects of Bifidobacterium on Intestinal Barrier Function in LPS-Induced Enterocyte Barrier Injury of Caco-2 Monolayers and in a Rat NEC Model

(2016) Xiang Ling et al.   PLoS One

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

(2016) Christopher J. Stewart et al.   Microbiome

The metabolomics of necrotising enterocolitis in preterm babies: an exploratory study

(2015) Amy Wilcock et al.   Journal of Maternal-Fetal & Neonatal Medicine

MetaboAnalyst 3.0—making metabolomics more meaningful

(2015) Jianguo Xia et al.   NUCLEIC ACIDS RESEARCH

Metabolomic and proteomic analysis of serum from preterm infants with necrotising entercolitis and late-onset sepsis

(2015) Christopher J Stewart et al.   PEDIATRIC RESEARCH

Temporal and spatial variation of the human microbiota during pregnancy

(2015) Daniel B. DiGiulio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Preterm gut microbiota and metabolome following discharge from intensive care

(2015) Christopher J. Stewart et al.   Scientific Reports

Human intestinal mucosa-associatedLactobacillusandBifidobacteriumstrains with probiotic properties modulate IL-10, IL-6 and IL-12 gene expression in THP-1 cells

(2015) M. Čitar et al.   Beneficial Microbes

The marriage of nutrigenomics with the microbiome: the case of infant-associated bifidobacteria and milk

(2014) David A Sela et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Sepsis From the Gut: The Enteric Habitat of Bacteria That Cause Late-Onset Neonatal Bloodstream Infections

(2014) Mike A. Carl et al.   CLINICAL INFECTIOUS DISEASES

The neonatal bowel microbiome in health and infection

(2014) Janet E. Berrington et al.   CURRENT OPINION IN INFECTIOUS DISEASES

The role of Staphylococcus epidermidis in neonatal sepsis: Guarding angel or pathogenic devil?

(2014) Ying Dong et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial and fungal viability in the preterm gut: NEC and sepsis

(2013) Christopher James Stewart et al.   Archives of Disease in Childhood-Fetal and Neonatal Edition

Distortions in Development of Intestinal Microbiota Associated with Late Onset Sepsis in Preterm Infants

(2013) Volker Mai et al.   PLoS One

Development of the Preterm Gut Microbiome in Twins at Risk of Necrotising Enterocolitis and Sepsis

(2013) Christopher J. Stewart et al.   PLoS One

Predicting Network Activity from High Throughput Metabolomics

(2013) Shuzhao Li et al.   PLoS Computational Biology

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants

(2013) Ardythe L Morrow et al.   Microbiome

The preterm gut microbiota: changes associated with necrotizing enterocolitis and infection

(2012) CJ Stewart et al.   ACTA PAEDIATRICA

Gut microbiota in preterm infants: assessment and relevance to health and disease

(2012) Janet Elizabeth Berrington et al.   Archives of Disease in Childhood-Fetal and Neonatal Edition

Gut microbial colonisation in premature neonates predicts neonatal sepsis

(2012) Juliette C Madan et al.   Archives of Disease in Childhood-Fetal and Neonatal Edition

Long-term neurodevelopmental outcomes after intrauterine and neonatal insults: a systematic review

(2012) Michael K Mwaniki et al.   LANCET

Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection

(2012) S. Fanning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bifidobacteria can protect from enteropathogenic infection through production of acetate

(2011) Shinji Fukuda et al.   NATURE

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Host-response biomarkers for diagnosis of late-onset septicemia and necrotizing enterocolitis in preterm infants

(2010) Pak Cheung Ng et al.   JOURNAL OF CLINICAL INVESTIGATION

integrOmics: an R package to unravel relationships between two omics datasets

(2009) Kim-Anh Lê Cao et al.   BIOINFORMATICS

Intestinal Microbial Ecology in Premature Infants Assessed with Non–Culture-Based Techniques

(2009) Maka Mshvildadze et al.   JOURNAL OF PEDIATRICS

A Sparse PLS for Variable Selection when Integrating Omics Data

(2008) Kim-Anh Lê Cao et al.   Statistical Applications in Genetics and Molecular Biology