Integrating random walk and binary regression to identify novel miRNA-disease association

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

EGBMMDA: Extreme Gradient Boosting Machine for MiRNA-Disease Association prediction

(2018) Xing Chen et al.   Cell Death & Disease

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

(2018) Xing Chen et al.   PLoS Computational Biology

RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   RNA Biology

MCMDA: Matrix completion for MiRNA-disease association prediction

(2017) Jian-Qiang Li et al.   Oncotarget

Large-scale prediction of microRNA-disease associations by combinatorial prioritization algorithm

(2017) Hua Yu et al.   Scientific Reports

LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   PLoS Computational Biology

PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction

(2017) Zhu-Hong You et al.   PLoS Computational Biology

Long non-coding RNAs and complex diseases: from experimental results to computational models

(2016) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning

(2016) Xing Chen et al.   PLoS Computational Biology

WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

(2016) Xing Chen et al.   Scientific Reports

Prediction of miRNA-disease associations with a vector space model

(2016) Claude Pasquier et al.   Scientific Reports

Drug–target interaction prediction: databases, web servers and computational models

(2015) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

Insights into the potential use of microRNAs as a novel class of biomarkers in esophageal cancer

(2015) J. Wan et al.   DISEASES OF THE ESOPHAGUS

Functional significance of aberrantly expressed microRNAs in prostate cancer

(2015) Yusuke Goto et al.   INTERNATIONAL JOURNAL OF UROLOGY

RBMMMDA: predicting multiple types of disease-microRNA associations

(2015) Xing Chen et al.   Scientific Reports

Hodgkin Lymphoma Cell Lines Are Characterized by a Specific miRNA Expression Profile

(2015) Johan H. Gibcus et al.   NEOPLASIA

Aromatase inhibitors in the breast cancer clinic: focus on exemestane

(2014) Kathleen Van Asten et al.   ENDOCRINE-RELATED CANCER

Semi-supervised learning for potential human microRNA-disease associations inference

(2014) Xing Chen et al.   Scientific Reports

Protein-driven inference of miRNA-disease associations

(2013) S. Mork et al.   BIOINFORMATICS

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures

(2013) Mohammed Alshalalfa et al.   BMC BIOINFORMATICS

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes

(2013) Hongbo Shi et al.   BMC Systems Biology

microRNA-183 is an oncogene targeting Dkk-3 and SMAD4 in prostate cancer

(2013) K Ueno et al.   BRITISH JOURNAL OF CANCER

MiR-106a is an independent prognostic marker in patients with glioblastoma

(2013) Shiguang Zhao et al.   NEURO-ONCOLOGY

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Downregulation of miR-140 promotes cancer stem cell formation in basal-like early stage breast cancer

(2013) Q Li et al.   ONCOGENE

Salivary MicroRNAs as Promising Biomarkers for Detection of Esophageal Cancer

(2013) Zijun Xie et al.   PLoS One

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors

(2013) Ping Xuan et al.   PLoS One

Circulating miRNAs as Surrogate Markers for Circulating Tumor Cells and Prognostic Markers in Metastatic Breast Cancer

(2012) D. Madhavan et al.   CLINICAL CANCER RESEARCH

Circulating miR-155 Expression in Plasma: A Potential Biomarker for Early Diagnosis of Esophageal Cancer in Humans

(2012) Ran Liu et al.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART A-CURRENT ISSUES

RWRMDA: predicting novel human microRNA–disease associations

(2012) Xing Chen et al.   Molecular BioSystems

Establishment of two-dimensional gel electrophoresis profiles of the human acute promyelocytic leukemia cell line NB4

(2012) PENGCHENG HE et al.   Molecular Medicine Reports

miRNA-145 is downregulated in atypical and anaplastic meningiomas and negatively regulates motility and proliferation of meningioma cells

(2012) N Kliese et al.   ONCOGENE

Circulating Micro-RNAs as Potential Blood-Based Markers for Early Stage Breast Cancer Detection

(2012) Michael G. Schrauder et al.   PLoS One

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

MicroRNA profiles of t(14;18)-negative follicular lymphoma support a late germinal center B-cell phenotype

(2011) E. Leich et al.   BLOOD

Identification of altered MicroRNA expression in canine lymphoid cell lines and cases of B- and T-Cell lymphomas

(2011) Elizabeth Uhl et al.   GENES CHROMOSOMES & CANCER

Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target-Dysregulated Network: Case Study of Prostate Cancer

(2011) J. Xu et al.   MOLECULAR CANCER THERAPEUTICS

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

dbDEMC: a database of differentially expressed miRNAs in human cancers

(2010) Zhen Yang et al.   BMC GENOMICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

MicroRNAs: Potential biomarkers for cancer diagnosis, prognosis and targets for therapy

(2009) William C.S. Cho   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One